Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.31□□□□□ -1.72
CTDP1Q9Y5B0 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 RNU6-1287P-201ENST00000362914 107 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 Y_RNA.128-201ENST00000363391 112 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 Y_RNA.301-201ENST00000364990 103 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 SNORD115-7-201ENST00000365306 82 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 Y_RNA.378-201ENST00000365652 113 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 RNU6-1060P-201ENST00000384664 107 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 MTHFD2P2-201ENST00000407725 247 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 BX323014.1-201ENST00000412876 237 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 SYF2P2-201ENST00000417620 583 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 GTF2IP13-201ENST00000438487 386 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 HMGB3P11-201ENST00000440127 604 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 AC234775.1-201ENST00000454247 670 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 Y_RNA.635-201ENST00000459041 101 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 AL049830.2-201ENST00000480072 201 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 RAC1P2-201ENST00000511164 579 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 RNU6-864P-201ENST00000516256 108 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 RNA5SP468-201ENST00000516782 93 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 RNU6-1092P-201ENST00000516955 87 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 AP001804.3-201ENST00000525146 880 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 CR383656.7-201ENST00000548164 174 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 AC024619.4-201ENST00000580924 316 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 MIR3171-201ENST00000584270 74 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 AC012443.1-201ENST00000605605 231 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 AP001486.3-201ENST00000615334 372 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 AC015967.1-201ENST00000619893 476 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 MTND4LP32-201ENST00000636111 270 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 UBE3AP2-201ENST00000429033 2259 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 AC010733.2-201ENST00000589496 5702 ntBASIC4.3□□□□□ -1.72
CTDP1Q9Y5B0 AC118273.1-201ENST00000525324 3006 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 TTN-204ENST00000360870 18218 ntTSL 5 BASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 MIR423-201ENST00000362201 94 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 MIR208A-201ENST00000362287 71 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 RNU6-989P-201ENST00000362756 107 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 RNU6-960P-201ENST00000364056 120 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 RNU6-61P-201ENST00000365528 109 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 SNORA4.3-201ENST00000365564 137 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 MIR513A2-201ENST00000385249 127 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 RNU6-821P-201ENST00000390995 107 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 RNU6-754P-201ENST00000391166 107 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 AL592114.1-201ENST00000403842 483 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 MRPS18BP2-201ENST00000434310 759 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 SNORD105B-201ENST00000458770 79 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 AC004801.2-202ENST00000463559 283 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 Y_RNA.654-201ENST00000497848 106 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 AC104806.1-201ENST00000508720 308 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 Y_RNA.682-201ENST00000516457 100 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 RNU6-273P-201ENST00000516937 96 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 AP000763.2-201ENST00000540641 163 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 AC006504.6-201ENST00000590142 199 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 APOOP1-201ENST00000604695 592 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 AL137849.1-201ENST00000604767 169 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 AC084781.2-201ENST00000615568 161 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 PLCE1P1-201ENST00000622094 305 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 AL357559.1-201ENST00000622228 274 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 AC119674.1-207ENST00000641355 633 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 AC005183.1-201ENST00000603687 1979 ntBASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CTDP1Q9Y5B0 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CTDP1Q9Y5B0 HSPA8P1-201ENST00000425843 1833 ntBASIC4.28□□□□□ -1.72
CTDP1Q9Y5B0 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CTDP1Q9Y5B0 MIR369-201ENST00000362155 70 ntBASIC4.28□□□□□ -1.72
CTDP1Q9Y5B0 RNA5SP72-201ENST00000364442 117 ntBASIC4.28□□□□□ -1.72
CTDP1Q9Y5B0 Y_RNA.576-201ENST00000384781 102 ntBASIC4.28□□□□□ -1.72
CTDP1Q9Y5B0 MIR606-201ENST00000384851 96 ntBASIC4.28□□□□□ -1.72
CTDP1Q9Y5B0 MIR559-201ENST00000385188 96 ntBASIC4.28□□□□□ -1.72
CTDP1Q9Y5B0 SNORA75.4-201ENST00000391278 119 ntBASIC4.28□□□□□ -1.72
CTDP1Q9Y5B0 UBE2V1P2-201ENST00000397758 440 ntBASIC4.28□□□□□ -1.72
CTDP1Q9Y5B0 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
CTDP1Q9Y5B0 RNU4-65P-201ENST00000410473 140 ntBASIC4.28□□□□□ -1.72
CTDP1Q9Y5B0 ATP5A1P2-201ENST00000412323 255 ntBASIC4.28□□□□□ -1.72
CTDP1Q9Y5B0 RPL21P24-201ENST00000413752 448 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 133 ms