Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC068057.2-201ENST00000624047 895 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 AC079416.3-201ENST00000624479 549 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 CTSLP2-204ENST00000629029 392 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 AC016717.2-201ENST00000609089 5141 ntBASIC2.73□□□□□ -1.97
VPS54Q9P1Q0 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 ZNF519P1-201ENST00000449011 1626 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 RNU5F-7P-201ENST00000363696 115 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 RNU6-553P-201ENST00000364047 96 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 MIR627-201ENST00000384979 97 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 RNA5SP181-201ENST00000410246 98 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 AL590365.1-201ENST00000450788 243 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 KATNBL1P6-201ENST00000453433 915 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 RPL30P6-201ENST00000475925 342 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 AL160314.1-201ENST00000490836 438 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 RNU6-927P-201ENST00000516199 100 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 AC022616.6-201ENST00000520479 119 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 AC107934.1-201ENST00000522215 217 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 MTCO1P47-201ENST00000523889 1271 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 AL158211.1-201ENST00000566763 763 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 MIR5697-201ENST00000578045 78 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 MIR3118-1-201ENST00000581787 76 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 HMGN2P15-201ENST00000585707 270 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 MTND4LP5-201ENST00000605152 292 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 AL136363.1-201ENST00000605349 337 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 AL137847.3-201ENST00000611521 109 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 AC104010.1-201ENST00000616889 150 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 UCA1.1-201ENST00000620952 75 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 AP003399.1-201ENST00000637534 361 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 AC010149.2-201ENST00000637608 315 ntBASIC2.72□□□□□ -1.97
VPS54Q9P1Q0 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 MIR449A-201ENST00000362113 91 ntBASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 RNY4P16-201ENST00000364768 94 ntBASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 AL031577.2-201ENST00000404133 280 ntBASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 AL353777.1-201ENST00000425552 326 ntBASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 RPL7P34-201ENST00000433316 712 ntBASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 MRPS17P3-201ENST00000465453 385 ntBASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 RPF2P2-201ENST00000504693 896 ntBASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 SUMO2P6-201ENST00000505273 288 ntBASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 RNA5SP290-201ENST00000517133 127 ntBASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 RN7SKP40-201ENST00000517211 242 ntBASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 AC109446.2-201ENST00000567872 497 ntBASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 AC135628.1-201ENST00000568867 534 ntBASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 AP000860.1-201ENST00000605250 559 ntBASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 AC239868.4-201ENST00000608318 671 ntBASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 AF246928.1-201ENST00000623768 87 ntBASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 AC120349.3-201ENST00000624377 529 ntBASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
VPS54Q9P1Q0 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 RNU4-82P-201ENST00000362443 140 ntBASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 RNU6-1284P-201ENST00000363701 100 ntBASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 Y_RNA.169-201ENST00000363745 96 ntBASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 RNU6-884P-201ENST00000363889 107 ntBASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 RNU6-701P-201ENST00000384059 107 ntBASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 MIR767-201ENST00000390228 109 ntBASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 ELOCP17-201ENST00000414751 326 ntBASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 AL365203.2-201ENST00000423444 196 ntBASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 RPS15AP28-201ENST00000435088 386 ntBASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 AC009296.1-201ENST00000443146 155 ntBASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 CECR9-201ENST00000453421 199 ntBASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 AC087588.1-201ENST00000462203 316 ntBASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 RPS29P20-201ENST00000489592 171 ntBASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 127.5 ms