Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 Y_RNA.473-201ENST00000384333 102 ntBASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 RNU6-306P-201ENST00000384617 107 ntBASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 RN7SKP156-201ENST00000410308 342 ntBASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 RNU6-55P-201ENST00000411092 107 ntBASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 RNU6-607P-201ENST00000411283 108 ntBASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 HMGB3P2-201ENST00000411913 584 ntBASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 AC063979.1-201ENST00000415539 377 ntBASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 RPL23AP50-201ENST00000434149 455 ntBASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 RPL23AP65-201ENST00000475608 468 ntBASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 HMGB1P30-201ENST00000492455 606 ntBASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 AC008716.1-201ENST00000511084 513 ntBASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 SCARNA16.2-201ENST00000516520 172 ntBASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 AC110588.1-201ENST00000559699 137 ntBASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 AL713922.2-201ENST00000619384 716 ntBASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 AL034408.1-202ENST00000636088 415 ntBASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 AC138393.1-203ENST00000327086 343 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 Y_RNA.193-201ENST00000363979 102 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 RNU6-1303P-201ENST00000364841 107 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 RNA5SP22-201ENST00000365393 109 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 Y_RNA.496-201ENST00000384444 101 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 MIR30B-201ENST00000384850 88 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 MIR301A-201ENST00000385261 86 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 AL358472.1-201ENST00000431295 329 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 AL360271.2-201ENST00000447710 161 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 HMGB3P30-201ENST00000457863 606 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 MTATP8P1-201ENST00000467115 207 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 AC092451.1-201ENST00000480211 153 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 RNU1-95P-201ENST00000516357 160 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 RNA5SP384-201ENST00000516615 116 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 RNU1-128P-201ENST00000516704 160 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 AC124312.5-201ENST00000604451 268 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 NUTF2P8-201ENST00000604593 363 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 ELOCP5-201ENST00000604924 333 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 RNU6-85P-201ENST00000605989 107 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 FP236240.3-201ENST00000623061 327 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 AC005086.4-201ENST00000623065 213 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 AC119674.1-207ENST00000641355 633 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 SUPT16HP1-201ENST00000537175 3133 ntBASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC5.19□□□□□ -1.58
CCDC87Q9NVE4 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 Z82217.1-201ENST00000625157 8149 ntBASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 RNU5A-1-201ENST00000362698 116 ntBASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 RNU6-702P-201ENST00000364982 107 ntBASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 RNU6-596P-201ENST00000365395 98 ntBASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 MIR578-201ENST00000384828 96 ntBASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 MIR517A-201ENST00000385001 87 ntBASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 HNRNPDLP1-201ENST00000412834 550 ntBASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 AC114482.1-201ENST00000418010 247 ntBASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 AL353621.1-201ENST00000418219 243 ntBASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 RPS12P23-201ENST00000419579 400 ntBASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 RPS15AP6-201ENST00000420703 385 ntBASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 AC011816.1-201ENST00000441346 546 ntBASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 PCMTD1P1-201ENST00000455560 355 ntBASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 AL445433.1-201ENST00000457507 257 ntBASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 AC068781.1-201ENST00000488231 618 ntBASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 MTND4LP22-201ENST00000508209 276 ntBASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 RNU6-794P-201ENST00000517261 64 ntBASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 AC007991.1-201ENST00000522680 631 ntBASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 HMGB3P26-201ENST00000560051 582 ntBASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 SUB1P3-201ENST00000564581 315 ntBASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 OR1M4P-201ENST00000589199 287 ntBASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
CCDC87Q9NVE4 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms