Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 Y_RNA.675-201ENST00000516389 149 ntBASIC1.63□□□□□ -2.15
CCDC42Q96M95 SNORA25.15-201ENST00000516487 89 ntBASIC1.63□□□□□ -2.15
CCDC42Q96M95 snoZ278.1-201ENST00000517059 112 ntBASIC1.63□□□□□ -2.15
CCDC42Q96M95 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC1.63□□□□□ -2.15
CCDC42Q96M95 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC1.63□□□□□ -2.15
CCDC42Q96M95 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC1.63□□□□□ -2.15
CCDC42Q96M95 AC125611.1-201ENST00000549563 229 ntBASIC1.63□□□□□ -2.15
CCDC42Q96M95 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.63□□□□□ -2.15
CCDC42Q96M95 AC090615.1-201ENST00000577519 154 ntBASIC1.63□□□□□ -2.15
CCDC42Q96M95 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC1.63□□□□□ -2.15
CCDC42Q96M95 AC002545.1-201ENST00000592511 181 ntBASIC1.63□□□□□ -2.15
CCDC42Q96M95 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC1.63□□□□□ -2.15
CCDC42Q96M95 AL357094.1-201ENST00000603845 844 ntBASIC1.63□□□□□ -2.15
CCDC42Q96M95 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC1.63□□□□□ -2.15
CCDC42Q96M95 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC1.63□□□□□ -2.15
CCDC42Q96M95 RNU1-42P-201ENST00000364033 160 ntBASIC1.62□□□□□ -2.15
CCDC42Q96M95 U3.13-201ENST00000364804 214 ntBASIC1.62□□□□□ -2.15
CCDC42Q96M95 TPMTP3-201ENST00000411928 735 ntBASIC1.62□□□□□ -2.15
CCDC42Q96M95 AL451054.2-201ENST00000420896 202 ntBASIC1.62□□□□□ -2.15
CCDC42Q96M95 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.62□□□□□ -2.15
CCDC42Q96M95 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC1.62□□□□□ -2.15
CCDC42Q96M95 AL360221.1-201ENST00000445989 335 ntBASIC1.62□□□□□ -2.15
CCDC42Q96M95 AC002381.1-201ENST00000447049 280 ntBASIC1.62□□□□□ -2.15
CCDC42Q96M95 AL160314.1-201ENST00000490836 438 ntBASIC1.62□□□□□ -2.15
CCDC42Q96M95 AC107953.1-201ENST00000522216 297 ntBASIC1.62□□□□□ -2.15
CCDC42Q96M95 DUXAP1-201ENST00000556632 463 ntBASIC1.62□□□□□ -2.15
CCDC42Q96M95 AC233702.2-202ENST00000562547 291 ntBASIC1.62□□□□□ -2.15
CCDC42Q96M95 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC1.62□□□□□ -2.15
CCDC42Q96M95 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC1.62□□□□□ -2.15
CCDC42Q96M95 AC109454.4-201ENST00000623411 649 ntBASIC1.62□□□□□ -2.15
CCDC42Q96M95 GMFB-210ENST00000628554 639 ntTSL 4 BASIC1.62□□□□□ -2.15
CCDC42Q96M95 MKKS-204ENST00000639674 192 ntBASIC1.62□□□□□ -2.15
CCDC42Q96M95 SUCLA2P2-201ENST00000417269 1309 ntBASIC1.62□□□□□ -2.15
CCDC42Q96M95 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.61□□□□□ -2.15
CCDC42Q96M95 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
CCDC42Q96M95 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC1.61□□□□□ -2.15
CCDC42Q96M95 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC1.61□□□□□ -2.15
CCDC42Q96M95 LUZP4P1-201ENST00000415420 344 ntBASIC1.61□□□□□ -2.15
CCDC42Q96M95 AC007098.1-201ENST00000420122 367 ntBASIC1.61□□□□□ -2.15
CCDC42Q96M95 MTCYBP32-201ENST00000427945 1084 ntBASIC1.61□□□□□ -2.15
CCDC42Q96M95 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC1.61□□□□□ -2.15
CCDC42Q96M95 AL691517.1-201ENST00000440833 1235 ntBASIC1.61□□□□□ -2.15
CCDC42Q96M95 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC1.61□□□□□ -2.15
CCDC42Q96M95 AC093677.1-201ENST00000514414 678 ntBASIC1.61□□□□□ -2.15
CCDC42Q96M95 MIR4285-201ENST00000581001 85 ntBASIC1.61□□□□□ -2.15
CCDC42Q96M95 MIR4637-201ENST00000582405 84 ntBASIC1.61□□□□□ -2.15
CCDC42Q96M95 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC1.61□□□□□ -2.15
CCDC42Q96M95 AL078605.1-201ENST00000603529 500 ntBASIC1.61□□□□□ -2.15
CCDC42Q96M95 AC091152.3-201ENST00000604227 325 ntBASIC1.61□□□□□ -2.15
CCDC42Q96M95 AC091834.1-201ENST00000614543 472 ntBASIC1.61□□□□□ -2.15
CCDC42Q96M95 AC084824.4-201ENST00000620106 731 ntBASIC1.61□□□□□ -2.15
CCDC42Q96M95 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
CCDC42Q96M95 Y_RNA.548-201ENST00000384656 105 ntBASIC1.6□□□□□ -2.15
CCDC42Q96M95 MIR517C-201ENST00000385103 95 ntBASIC1.6□□□□□ -2.15
CCDC42Q96M95 SNRPEP2-201ENST00000397592 279 ntBASIC1.6□□□□□ -2.15
CCDC42Q96M95 MTCYBP38-201ENST00000417160 1123 ntBASIC1.6□□□□□ -2.15
CCDC42Q96M95 AC244636.1-201ENST00000421152 228 ntBASIC1.6□□□□□ -2.15
CCDC42Q96M95 MOB1AP2-201ENST00000446060 614 ntBASIC1.6□□□□□ -2.15
CCDC42Q96M95 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC1.6□□□□□ -2.15
CCDC42Q96M95 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.6□□□□□ -2.15
CCDC42Q96M95 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC1.6□□□□□ -2.15
CCDC42Q96M95 AC022861.1-201ENST00000522981 663 ntBASIC1.6□□□□□ -2.15
CCDC42Q96M95 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.6□□□□□ -2.15
CCDC42Q96M95 MTCYBP23-201ENST00000558717 1102 ntBASIC1.6□□□□□ -2.15
CCDC42Q96M95 AC021739.1-201ENST00000559631 174 ntBASIC1.6□□□□□ -2.15
CCDC42Q96M95 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC1.6□□□□□ -2.15
CCDC42Q96M95 AL031274.2-201ENST00000599419 203 ntBASIC1.6□□□□□ -2.15
CCDC42Q96M95 AC022202.1-201ENST00000613515 211 ntBASIC1.6□□□□□ -2.15
CCDC42Q96M95 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC1.6□□□□□ -2.15
CCDC42Q96M95 MTND5P10-201ENST00000603719 1809 ntBASIC1.59□□□□□ -2.15
CCDC42Q96M95 AL356292.1-201ENST00000283110 373 ntBASIC1.59□□□□□ -2.15
CCDC42Q96M95 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.59□□□□□ -2.15
CCDC42Q96M95 SNORA23-201ENST00000365128 182 ntBASIC1.59□□□□□ -2.15
CCDC42Q96M95 RNA5SP240-201ENST00000365355 128 ntBASIC1.59□□□□□ -2.15
CCDC42Q96M95 RNU1-39P-201ENST00000383897 165 ntBASIC1.59□□□□□ -2.15
CCDC42Q96M95 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
CCDC42Q96M95 AC068050.1-201ENST00000394891 380 ntBASIC1.59□□□□□ -2.15
CCDC42Q96M95 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
CCDC42Q96M95 RNU6-516P-201ENST00000411381 104 ntBASIC1.59□□□□□ -2.15
CCDC42Q96M95 RPL26P27-201ENST00000414397 437 ntBASIC1.59□□□□□ -2.15
CCDC42Q96M95 AL355994.1-201ENST00000424379 260 ntBASIC1.59□□□□□ -2.15
CCDC42Q96M95 MTND6P13-201ENST00000443510 523 ntBASIC1.59□□□□□ -2.15
CCDC42Q96M95 GXYLT1P1-201ENST00000446657 490 ntBASIC1.59□□□□□ -2.15
CCDC42Q96M95 RPL7P55-201ENST00000450522 746 ntBASIC1.59□□□□□ -2.15
CCDC42Q96M95 AC005410.1-202ENST00000460347 485 ntBASIC1.59□□□□□ -2.15
CCDC42Q96M95 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC42Q96M95 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC1.59□□□□□ -2.15
CCDC42Q96M95 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC42Q96M95 RNU6-295P-201ENST00000516901 104 ntBASIC1.59□□□□□ -2.15
CCDC42Q96M95 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.59□□□□□ -2.15
CCDC42Q96M95 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC42Q96M95 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC42Q96M95 NRBF2P1-201ENST00000587407 859 ntBASIC1.59□□□□□ -2.15
CCDC42Q96M95 AC004805.2-201ENST00000605382 482 ntBASIC1.59□□□□□ -2.15
CCDC42Q96M95 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC42Q96M95 AC003001.2-201ENST00000616294 831 ntBASIC1.59□□□□□ -2.15
CCDC42Q96M95 MIR5739-201ENST00000619803 80 ntBASIC1.59□□□□□ -2.15
CCDC42Q96M95 AL138713.1-201ENST00000624026 2130 ntBASIC1.59□□□□□ -2.15
CCDC42Q96M95 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC1.59□□□□□ -2.16
CCDC42Q96M95 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 141.4 ms