Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.34□□□□□ -2.03
SKA3Q8IX90 RPL37P6-201ENST00000460682 294 ntBASIC2.34□□□□□ -2.03
SKA3Q8IX90 RN7SKP40-201ENST00000517211 242 ntBASIC2.34□□□□□ -2.03
SKA3Q8IX90 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.34□□□□□ -2.03
SKA3Q8IX90 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC2.34□□□□□ -2.03
SKA3Q8IX90 AP003181.2-201ENST00000528941 181 ntBASIC2.34□□□□□ -2.03
SKA3Q8IX90 OR4R1P-201ENST00000529879 463 ntBASIC2.34□□□□□ -2.03
SKA3Q8IX90 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.34□□□□□ -2.03
SKA3Q8IX90 AC009163.5-201ENST00000575421 637 ntBASIC2.34□□□□□ -2.03
SKA3Q8IX90 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.34□□□□□ -2.03
SKA3Q8IX90 MIR3118-1-201ENST00000581787 76 ntBASIC2.34□□□□□ -2.03
SKA3Q8IX90 ABBA01006766.1-201ENST00000584728 294 ntBASIC2.34□□□□□ -2.03
SKA3Q8IX90 AC011471.1-201ENST00000585766 187 ntBASIC2.34□□□□□ -2.03
SKA3Q8IX90 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC2.34□□□□□ -2.03
SKA3Q8IX90 AF131215.7-201ENST00000602443 707 ntBASIC2.34□□□□□ -2.03
SKA3Q8IX90 AC099654.13-201ENST00000639774 207 ntBASIC2.34□□□□□ -2.03
SKA3Q8IX90 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
SKA3Q8IX90 MTND4P4-201ENST00000439033 1366 ntBASIC2.34□□□□□ -2.04
SKA3Q8IX90 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.33□□□□□ -2.04
SKA3Q8IX90 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
SKA3Q8IX90 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
SKA3Q8IX90 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.33□□□□□ -2.04
SKA3Q8IX90 RNU6-511P-201ENST00000363496 107 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 MIR767-201ENST00000390228 109 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 SNORA26.8-201ENST00000391306 124 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC2.33□□□□□ -2.04
SKA3Q8IX90 NPM1P11-201ENST00000417106 855 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.33□□□□□ -2.04
SKA3Q8IX90 ZNF90P2-204ENST00000419323 1075 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC2.33□□□□□ -2.04
SKA3Q8IX90 SUMO1P4-201ENST00000429430 302 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 HMGB1P27-201ENST00000431429 603 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 MTND1P28-201ENST00000435623 950 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 AL714022.1-201ENST00000439897 151 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 MRPL50P4-201ENST00000446432 475 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 COX6CP12-201ENST00000446748 202 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 AC087588.1-201ENST00000462203 316 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 AC116337.2-201ENST00000477662 156 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.33□□□□□ -2.04
SKA3Q8IX90 RN7SL432P-201ENST00000484057 298 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC2.33□□□□□ -2.04
SKA3Q8IX90 FABP5P5-201ENST00000515537 406 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 AC060788.1-201ENST00000521318 469 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 AP006587.4-201ENST00000526053 529 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 AP003122.4-201ENST00000530980 758 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 AC007834.2-201ENST00000536310 343 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC2.33□□□□□ -2.04
SKA3Q8IX90 MIR4635-201ENST00000583759 79 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 HMGN2P15-201ENST00000585707 270 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 AC239868.4-201ENST00000608318 671 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 FTX_3.1-201ENST00000610451 147 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
SKA3Q8IX90 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.33□□□□□ -2.04
SKA3Q8IX90 AL589994.2-201ENST00000621124 579 ntBASIC2.33□□□□□ -2.04
SKA3Q8IX90 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.33□□□□□ -2.04
SKA3Q8IX90 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.33□□□□□ -2.04
SKA3Q8IX90 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.32□□□□□ -2.04
SKA3Q8IX90 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.32□□□□□ -2.04
SKA3Q8IX90 RNU4-21P-201ENST00000362802 126 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 RNU6-525P-201ENST00000363685 104 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 SNORA80E-201ENST00000384744 137 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 MIR144-201ENST00000384886 86 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 AL021407.1-201ENST00000404531 386 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 RNU2-52P-201ENST00000410680 190 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.32□□□□□ -2.04
SKA3Q8IX90 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.32□□□□□ -2.04
SKA3Q8IX90 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.32□□□□□ -2.04
SKA3Q8IX90 CYCSP46-201ENST00000423569 204 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 AC104651.1-201ENST00000427559 735 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 AC093106.2-201ENST00000428212 385 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 SNRPEP9-201ENST00000436794 238 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC2.32□□□□□ -2.04
SKA3Q8IX90 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC2.32□□□□□ -2.04
SKA3Q8IX90 AC092798.1-201ENST00000458542 409 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 SNORD109B-201ENST00000458961 67 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 SNORD109A-201ENST00000459128 67 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 SNORD97-201ENST00000459187 142 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.32□□□□□ -2.04
SKA3Q8IX90 SNORA31.3-201ENST00000516029 96 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 RNA5SP337-201ENST00000517007 109 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC2.32□□□□□ -2.04
SKA3Q8IX90 MTCO1P47-201ENST00000523889 1271 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.32□□□□□ -2.04
SKA3Q8IX90 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.32□□□□□ -2.04
SKA3Q8IX90 HMGN1P30-201ENST00000589286 268 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 AL670379.6-201ENST00000603753 252 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 AL670379.11-201ENST00000604059 253 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 AL161798.1-201ENST00000604630 131 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 AC008162.1-201ENST00000604718 254 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 AL670379.1-201ENST00000604752 252 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 AL137843.1-201ENST00000605078 385 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 MTND4LP5-201ENST00000605152 292 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 AL670379.5-201ENST00000605253 252 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 AL670379.12-201ENST00000605291 253 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 AL670379.8-201ENST00000605353 252 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 AL670379.7-201ENST00000605823 252 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 RNU6-87P-201ENST00000607561 108 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC2.32□□□□□ -2.04
SKA3Q8IX90 AC103710.2-201ENST00000609912 942 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 AC004852.3-201ENST00000614131 326 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 183.5 ms