Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 AL355802.3-201ENST00000607571 545 ntBASIC4.89□□□□□ -1.63
USP48Q86UV5 AL133215.3-201ENST00000609801 448 ntBASIC4.89□□□□□ -1.63
USP48Q86UV5 MIR6868-201ENST00000611215 58 ntBASIC4.89□□□□□ -1.63
USP48Q86UV5 AC040896.1-201ENST00000613819 479 ntBASIC4.89□□□□□ -1.63
USP48Q86UV5 AC008121.3-201ENST00000618726 433 ntBASIC4.89□□□□□ -1.63
USP48Q86UV5 MTND4LP32-201ENST00000636111 270 ntBASIC4.89□□□□□ -1.63
USP48Q86UV5 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.89□□□□□ -1.63
USP48Q86UV5 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.89□□□□□ -1.63
USP48Q86UV5 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
USP48Q86UV5 RN7SKP44-201ENST00000363602 316 ntBASIC4.88□□□□□ -1.63
USP48Q86UV5 SNORA4.3-201ENST00000365564 137 ntBASIC4.88□□□□□ -1.63
USP48Q86UV5 RNU6-1160P-201ENST00000384546 104 ntBASIC4.88□□□□□ -1.63
USP48Q86UV5 RPL37P10-201ENST00000412884 288 ntBASIC4.88□□□□□ -1.63
USP48Q86UV5 UBE2Q2P12-201ENST00000414573 204 ntBASIC4.88□□□□□ -1.63
USP48Q86UV5 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC4.88□□□□□ -1.63
USP48Q86UV5 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.88□□□□□ -1.63
USP48Q86UV5 RPL21P109-201ENST00000422213 475 ntBASIC4.88□□□□□ -1.63
USP48Q86UV5 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC4.88□□□□□ -1.63
USP48Q86UV5 Z82205.1-201ENST00000428456 297 ntBASIC4.88□□□□□ -1.63
USP48Q86UV5 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC4.88□□□□□ -1.63
USP48Q86UV5 AC027575.1-201ENST00000481064 460 ntBASIC4.88□□□□□ -1.63
USP48Q86UV5 SNORA31.8-201ENST00000516327 108 ntBASIC4.88□□□□□ -1.63
USP48Q86UV5 RNU6-143P-201ENST00000516942 93 ntBASIC4.88□□□□□ -1.63
USP48Q86UV5 Y_RNA.718-201ENST00000517110 102 ntBASIC4.88□□□□□ -1.63
USP48Q86UV5 COPS8P3-201ENST00000526024 482 ntBASIC4.88□□□□□ -1.63
USP48Q86UV5 AC138761.3-201ENST00000579993 334 ntBASIC4.88□□□□□ -1.63
USP48Q86UV5 AC011471.1-201ENST00000585766 187 ntBASIC4.88□□□□□ -1.63
USP48Q86UV5 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.88□□□□□ -1.63
USP48Q86UV5 AL627309.6-201ENST00000606857 840 ntBASIC4.88□□□□□ -1.63
USP48Q86UV5 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
USP48Q86UV5 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
USP48Q86UV5 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
USP48Q86UV5 AC116096.1-201ENST00000566804 2314 ntBASIC4.88□□□□□ -1.63
USP48Q86UV5 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.87□□□□□ -1.63
USP48Q86UV5 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC4.87□□□□□ -1.63
USP48Q86UV5 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
USP48Q86UV5 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
USP48Q86UV5 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
USP48Q86UV5 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
USP48Q86UV5 SNORD116-11-201ENST00000383882 92 ntBASIC4.87□□□□□ -1.63
USP48Q86UV5 SNORA3C-201ENST00000408792 125 ntBASIC4.87□□□□□ -1.63
USP48Q86UV5 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.87□□□□□ -1.63
USP48Q86UV5 RPL27AP8-201ENST00000424277 446 ntBASIC4.87□□□□□ -1.63
USP48Q86UV5 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.87□□□□□ -1.63
USP48Q86UV5 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC4.87□□□□□ -1.63
USP48Q86UV5 HSPD1P21-201ENST00000436541 245 ntBASIC4.87□□□□□ -1.63
USP48Q86UV5 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC4.87□□□□□ -1.63
USP48Q86UV5 RPL31P60-201ENST00000478450 367 ntBASIC4.87□□□□□ -1.63
USP48Q86UV5 AC079140.5-201ENST00000507882 310 ntBASIC4.87□□□□□ -1.63
USP48Q86UV5 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.87□□□□□ -1.63
USP48Q86UV5 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.87□□□□□ -1.63
USP48Q86UV5 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC4.87□□□□□ -1.63
USP48Q86UV5 AC012119.1-201ENST00000603184 222 ntBASIC4.87□□□□□ -1.63
USP48Q86UV5 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC4.87□□□□□ -1.63
USP48Q86UV5 MIR7702-201ENST00000621931 59 ntBASIC4.87□□□□□ -1.63
USP48Q86UV5 AL359757.2-201ENST00000624309 274 ntBASIC4.87□□□□□ -1.63
USP48Q86UV5 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC4.87□□□□□ -1.63
USP48Q86UV5 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
USP48Q86UV5 Z82217.1-201ENST00000625157 8149 ntBASIC4.87□□□□□ -1.63
USP48Q86UV5 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
USP48Q86UV5 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.87□□□□□ -1.63
USP48Q86UV5 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.87□□□□□ -1.63
USP48Q86UV5 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.87□□□□□ -1.63
USP48Q86UV5 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.87□□□□□ -1.63
USP48Q86UV5 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.87□□□□□ -1.63
USP48Q86UV5 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
USP48Q86UV5 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.86□□□□□ -1.63
USP48Q86UV5 RNU6-1167P-201ENST00000363227 94 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 RNU6-371P-201ENST00000364283 108 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 RNA5SP167-201ENST00000365461 116 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 RNU6-128P-201ENST00000383976 107 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 MIR183-201ENST00000384958 110 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 AL360182.1-201ENST00000397433 468 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 RNA5SP239-201ENST00000410218 129 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC4.86□□□□□ -1.63
USP48Q86UV5 SYF2P2-201ENST00000417620 583 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 NDUFB4P7-201ENST00000423198 363 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 RPL21P66-201ENST00000426566 466 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 AL592045.1-201ENST00000429867 352 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 SNAP23P1-201ENST00000433229 246 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 RPS20P22-201ENST00000473700 357 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC4.86□□□□□ -1.63
USP48Q86UV5 AC008526.1-201ENST00000509149 338 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 AC074250.1-201ENST00000511117 192 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 RN7SKP24-201ENST00000515888 284 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 RNU6-1256P-201ENST00000516539 103 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 RNA5SP471-201ENST00000516971 106 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 Y_RNA.711-201ENST00000516993 102 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC4.86□□□□□ -1.63
USP48Q86UV5 ATP5F1P5-201ENST00000526403 760 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC4.86□□□□□ -1.63
USP48Q86UV5 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC4.86□□□□□ -1.63
USP48Q86UV5 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC4.86□□□□□ -1.63
USP48Q86UV5 CYCSP30-201ENST00000546447 172 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC4.86□□□□□ -1.63
USP48Q86UV5 AC063950.1-201ENST00000552036 308 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 MIR548AC-201ENST00000585049 88 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 AC098826.3-201ENST00000603823 466 ntBASIC4.86□□□□□ -1.63
USP48Q86UV5 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
USP48Q86UV5 AL138726.1-201ENST00000614873 333 ntBASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms