Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 RNU6-351P-201ENST00000516097 100 ntBASIC0.73□□□□□ -2.29
USF3Q68DE3 AC118273.2-201ENST00000532092 465 ntBASIC0.73□□□□□ -2.29
USF3Q68DE3 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC0.73□□□□□ -2.29
USF3Q68DE3 AC087481.2-201ENST00000565492 330 ntBASIC0.73□□□□□ -2.29
USF3Q68DE3 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC0.73□□□□□ -2.29
USF3Q68DE3 AL031274.2-201ENST00000599419 203 ntBASIC0.73□□□□□ -2.29
USF3Q68DE3 AC025165.5-201ENST00000602802 578 ntBASIC0.73□□□□□ -2.29
USF3Q68DE3 AC021749.1-201ENST00000604322 607 ntBASIC0.73□□□□□ -2.29
USF3Q68DE3 LINC02211-204ENST00000642024 1070 ntBASIC0.73□□□□□ -2.29
USF3Q68DE3 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC0.73□□□□□ -2.29
USF3Q68DE3 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC0.73□□□□□ -2.29
USF3Q68DE3 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC0.73□□□□□ -2.29
USF3Q68DE3 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC0.73□□□□□ -2.29
USF3Q68DE3 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC0.73□□□□□ -2.29
USF3Q68DE3 TRAPPC13P1-201ENST00000435991 1062 ntBASIC0.73□□□□□ -2.29
USF3Q68DE3 Z82190.1-201ENST00000454534 490 ntBASIC0.73□□□□□ -2.29
USF3Q68DE3 AL359385.1-201ENST00000456509 365 ntBASIC0.73□□□□□ -2.29
USF3Q68DE3 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC0.73□□□□□ -2.29
USF3Q68DE3 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC0.73□□□□□ -2.29
USF3Q68DE3 Y_RNA.681-201ENST00000516445 113 ntBASIC0.73□□□□□ -2.29
USF3Q68DE3 AC103833.1-201ENST00000517442 172 ntBASIC0.73□□□□□ -2.29
USF3Q68DE3 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC0.73□□□□□ -2.29
USF3Q68DE3 FAM60BP-201ENST00000578364 658 ntBASIC0.73□□□□□ -2.29
USF3Q68DE3 MIR3609-201ENST00000582661 80 ntBASIC0.73□□□□□ -2.29
USF3Q68DE3 AL512605.2-201ENST00000592972 256 ntBASIC0.73□□□□□ -2.29
USF3Q68DE3 FAM71BP1-201ENST00000604431 523 ntBASIC0.73□□□□□ -2.29
USF3Q68DE3 AC055876.5-201ENST00000605667 259 ntBASIC0.73□□□□□ -2.29
USF3Q68DE3 AL627230.6-201ENST00000611129 280 ntBASIC0.73□□□□□ -2.29
USF3Q68DE3 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC0.73□□□□□ -2.29
USF3Q68DE3 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC0.73□□□□□ -2.29
USF3Q68DE3 MIR126-201ENST00000362291 85 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 RNU6-1243P-201ENST00000364028 107 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 AC099548.1-201ENST00000421443 426 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 OFD1P12Y-201ENST00000427963 1207 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 OFD1P13Y-201ENST00000431179 1232 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 Z80107.1-201ENST00000436830 412 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC0.72□□□□□ -2.29
USF3Q68DE3 CABYRP1-201ENST00000465493 1045 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 AC107032.1-201ENST00000485945 480 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 AC114786.4-201ENST00000508771 728 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC0.72□□□□□ -2.29
USF3Q68DE3 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC0.72□□□□□ -2.29
USF3Q68DE3 AC114797.1-201ENST00000514003 728 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 SNORA70.16-201ENST00000516390 95 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 AC021646.1-201ENST00000605469 484 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 SNORD14A-201ENST00000606526 91 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 AC135507.1-201ENST00000607214 561 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 AL161423.1-201ENST00000613700 262 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 AC025263.3-201ENST00000622965 1396 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 CR848007.2-201ENST00000424918 787 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 RPL7L1P10-201ENST00000427790 463 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 NDUFA5P10-201ENST00000432147 357 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC0.72□□□□□ -2.29
USF3Q68DE3 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC0.72□□□□□ -2.29
USF3Q68DE3 ANKRD26P4-201ENST00000455755 950 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 AC104689.1-201ENST00000473356 768 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC0.72□□□□□ -2.29
USF3Q68DE3 AC103851.1-201ENST00000506833 274 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
USF3Q68DE3 RNU6-1004P-201ENST00000516584 111 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC0.72□□□□□ -2.29
USF3Q68DE3 AGGF1P5-201ENST00000567900 919 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 OR1M4P-201ENST00000589199 287 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 AC016252.1-201ENST00000609721 474 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 AC090970.3-201ENST00000612566 866 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 AC010889.1-201ENST00000566193 2666 ntBASIC0.72□□□□□ -2.29
USF3Q68DE3 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC0.71□□□□□ -2.29
USF3Q68DE3 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
USF3Q68DE3 SNORD114-2-201ENST00000363953 78 ntBASIC0.71□□□□□ -2.3
USF3Q68DE3 RNU6-31P-201ENST00000384388 108 ntBASIC0.71□□□□□ -2.3
USF3Q68DE3 MIR676-201ENST00000390702 67 ntBASIC0.71□□□□□ -2.3
USF3Q68DE3 RPS15AP38-201ENST00000413110 372 ntBASIC0.71□□□□□ -2.3
USF3Q68DE3 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC0.71□□□□□ -2.3
USF3Q68DE3 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC0.71□□□□□ -2.3
USF3Q68DE3 OR6C72P-201ENST00000451403 892 ntBASIC0.71□□□□□ -2.3
USF3Q68DE3 TRGVB-201ENST00000453257 471 ntBASIC0.71□□□□□ -2.3
USF3Q68DE3 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC0.71□□□□□ -2.3
USF3Q68DE3 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
USF3Q68DE3 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC0.71□□□□□ -2.3
USF3Q68DE3 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC0.71□□□□□ -2.3
USF3Q68DE3 POLR2KP1-201ENST00000553226 168 ntBASIC0.71□□□□□ -2.3
USF3Q68DE3 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC0.71□□□□□ -2.3
USF3Q68DE3 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC0.71□□□□□ -2.3
USF3Q68DE3 AP000238.1-201ENST00000608759 426 ntBASIC0.71□□□□□ -2.3
USF3Q68DE3 AP000254.1-201ENST00000609934 520 ntBASIC0.71□□□□□ -2.3
USF3Q68DE3 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC0.71□□□□□ -2.3
USF3Q68DE3 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC0.71□□□□□ -2.3
USF3Q68DE3 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC0.7□□□□□ -2.3
USF3Q68DE3 RNU6-1083P-201ENST00000384022 107 ntBASIC0.7□□□□□ -2.3
USF3Q68DE3 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC0.7□□□□□ -2.3
USF3Q68DE3 RPL7P34-201ENST00000433316 712 ntBASIC0.7□□□□□ -2.3
USF3Q68DE3 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC0.7□□□□□ -2.3
USF3Q68DE3 TPTE2P6-202ENST00000445572 1007 ntBASIC0.7□□□□□ -2.3
USF3Q68DE3 AC104629.2-201ENST00000468627 598 ntBASIC0.7□□□□□ -2.3
USF3Q68DE3 AC023141.11-201ENST00000508864 202 ntBASIC0.7□□□□□ -2.3
USF3Q68DE3 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC0.7□□□□□ -2.3
USF3Q68DE3 RNA5SP330-201ENST00000517096 96 ntBASIC0.7□□□□□ -2.3
USF3Q68DE3 OR5AL2P-201ENST00000532185 920 ntBASIC0.7□□□□□ -2.3
USF3Q68DE3 AC004852.3-201ENST00000614131 326 ntBASIC0.7□□□□□ -2.3
USF3Q68DE3 MIR6835-201ENST00000621552 64 ntBASIC0.7□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms