Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
USP39Q53GS9 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.08□□□□□ -1.76
USP39Q53GS9 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
USP39Q53GS9 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.08□□□□□ -1.76
USP39Q53GS9 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC4.08□□□□□ -1.76
USP39Q53GS9 AL133153.1-201ENST00000557756 303 ntBASIC4.08□□□□□ -1.76
USP39Q53GS9 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
USP39Q53GS9 MIR6868-201ENST00000611215 58 ntBASIC4.08□□□□□ -1.76
USP39Q53GS9 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC4.08□□□□□ -1.76
USP39Q53GS9 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
USP39Q53GS9 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
USP39Q53GS9 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
USP39Q53GS9 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.08□□□□□ -1.76
USP39Q53GS9 CDC27P3-201ENST00000635418 1910 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
USP39Q53GS9 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
USP39Q53GS9 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.07□□□□□ -1.76
USP39Q53GS9 RNA5SP124-201ENST00000362739 110 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 SNORD3E-201ENST00000362899 217 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 RNU6-1243P-201ENST00000364028 107 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 SNORD74.4-201ENST00000364129 80 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 Y_RNA.257-201ENST00000364596 102 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 Y_RNA.307-201ENST00000365022 117 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 SNORD82-201ENST00000365530 70 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 RNU4-70P-201ENST00000384579 139 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
USP39Q53GS9 RNU6-278P-201ENST00000390945 109 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 SNORA75.6-201ENST00000391318 127 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
USP39Q53GS9 RPL36AP6-201ENST00000435770 321 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.07□□□□□ -1.76
USP39Q53GS9 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC4.07□□□□□ -1.76
USP39Q53GS9 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC4.07□□□□□ -1.76
USP39Q53GS9 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC4.07□□□□□ -1.76
USP39Q53GS9 RNU7-59P-201ENST00000459101 61 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 AC006517.1-201ENST00000480485 328 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 RN7SL323P-201ENST00000494712 295 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.07□□□□□ -1.76
USP39Q53GS9 AC025554.1-201ENST00000505641 188 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 HIGD1AP13-201ENST00000509878 289 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 RNU6-189P-201ENST00000516120 101 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 RNU6-1016P-201ENST00000516689 94 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.07□□□□□ -1.76
USP39Q53GS9 FAM60DP-201ENST00000524174 632 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.07□□□□□ -1.76
USP39Q53GS9 AC091516.1-201ENST00000549191 703 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.07□□□□□ -1.76
USP39Q53GS9 AC025627.2-201ENST00000576220 160 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 MIR4293-201ENST00000584305 78 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 MIR5684-201ENST00000585074 65 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 AC005357.1-201ENST00000588399 301 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 AL512605.2-201ENST00000592972 256 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 AC025946.2-201ENST00000603398 234 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 AC011890.2-201ENST00000613393 294 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 AL391261.4-201ENST00000616012 481 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC4.07□□□□□ -1.76
USP39Q53GS9 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
USP39Q53GS9 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC4.07□□□□□ -1.76
USP39Q53GS9 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
USP39Q53GS9 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
USP39Q53GS9 AP001486.2-201ENST00000561652 5113 ntBASIC4.07□□□□□ -1.76
USP39Q53GS9 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
USP39Q53GS9 TPTE2P4-201ENST00000258589 1605 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC4.06□□□□□ -1.76
USP39Q53GS9 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.06□□□□□ -1.76
USP39Q53GS9 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
USP39Q53GS9 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.06□□□□□ -1.76
USP39Q53GS9 RNU6-238P-201ENST00000363313 106 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 SNORA73.2-201ENST00000364946 201 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
USP39Q53GS9 RNU6-1127P-201ENST00000384580 107 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 RNU6-550P-201ENST00000391057 101 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 MIR450B-201ENST00000401182 78 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 RNU4-46P-201ENST00000410818 138 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 HMGN1P24-201ENST00000412282 298 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 RPS15AP40-201ENST00000419621 391 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC4.06□□□□□ -1.76
USP39Q53GS9 AC008267.5-201ENST00000424928 265 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 ELOCP18-201ENST00000434209 337 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 AL353748.1-201ENST00000440753 474 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 RPS15AP27-201ENST00000449183 343 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 RPS24P6-201ENST00000452670 400 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 RPL36AP13-201ENST00000457490 317 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 SCARNA18-201ENST00000459004 134 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 AC104564.1-201ENST00000493028 407 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 AC104806.1-201ENST00000508720 308 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
USP39Q53GS9 Y_RNA.661-201ENST00000516003 99 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 Y_RNA.670-201ENST00000516255 105 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 RNU6-699P-201ENST00000517081 110 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 RNU6-64P-201ENST00000517119 105 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC4.06□□□□□ -1.76
USP39Q53GS9 AL590099.1-201ENST00000615276 138 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 DLEU2_5.1-201ENST00000615567 84 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 AC010378.1-201ENST00000619270 362 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 AC012314.7-201ENST00000619693 93 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 MIR7702-201ENST00000621931 59 ntBASIC4.06□□□□□ -1.76
USP39Q53GS9 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
USP39Q53GS9 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 155 ms