Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 EIF4E2P1-201ENST00000393781 255 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 AL138878.1-201ENST00000405131 347 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 AL356432.1-201ENST00000405809 419 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 BX323014.1-201ENST00000412876 237 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 HSPE1P1-201ENST00000421494 318 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 AC091390.3-201ENST00000426478 338 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 UBE2V1P7-201ENST00000446395 340 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 AL133162.1-201ENST00000463228 453 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 RPL21P104-201ENST00000464143 478 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 OARD1-209ENST00000471367 401 ntTSL 2 BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 RPL21P93-201ENST00000480465 489 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 RPS15AP34-201ENST00000487776 387 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 AL160314.1-201ENST00000490836 438 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 TRBVA-201ENST00000498804 316 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 UBE2CP3-201ENST00000502715 450 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 AC079140.5-201ENST00000507882 310 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 HMGN1P11-201ENST00000508668 303 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 RNU6-189P-201ENST00000516120 101 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 RNU6-143P-201ENST00000516942 93 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 AC008011.1-201ENST00000545989 227 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 RPS3AP23-202ENST00000574601 686 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 BNIP3P25-201ENST00000596023 559 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 AC244505.7-201ENST00000599675 272 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 AC024220.1-201ENST00000603675 484 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 AC098826.3-201ENST00000603823 466 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 AP003400.5-201ENST00000624827 617 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 HSPA8P4-201ENST00000511877 1920 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 MAPK10-372ENST00000641954 3413 ntBASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.61□□□□□ -1.83
PTCHD3Q3KNS1 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 RNU6-50P-201ENST00000362356 103 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 RNU6-371P-201ENST00000364283 108 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 RNU6-715P-201ENST00000365204 103 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 Y_RNA.414-201ENST00000384011 101 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 MIR301A-201ENST00000385261 86 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 SNORA16.2-201ENST00000390991 127 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 RHEBP3-201ENST00000411920 351 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 AL035423.1-201ENST00000420331 213 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 AL669831.1-202ENST00000428504 417 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 AC091286.1-201ENST00000431233 461 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 NDUFB1P1-201ENST00000435191 180 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 TAAR7P-201ENST00000436141 242 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 NDUFA5P4-201ENST00000436704 385 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 GTF2IP13-201ENST00000438487 386 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 RPS24P13-201ENST00000442520 397 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 AMD1P1-201ENST00000457220 922 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 HIGD1AP13-201ENST00000509878 289 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 SNORA19.2-201ENST00000516013 114 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 RNU6-1038P-201ENST00000516516 104 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 RNU6-1256P-201ENST00000516539 103 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 RANP9-201ENST00000519957 271 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 IGKV2D-19-201ENST00000523346 262 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 AC011611.1-201ENST00000552179 197 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 AL161798.1-201ENST00000604630 131 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 SNORA51-201ENST00000606420 132 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 Z82243.1-201ENST00000609432 473 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 U2.17-201ENST00000611454 95 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 MTND1P37-201ENST00000636562 264 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 MTND4P29-201ENST00000503122 1372 ntBASIC3.6□□□□□ -1.83
PTCHD3Q3KNS1 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 MFSD8-236ENST00000641509 4050 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 SNORD113-7-201ENST00000363762 77 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 RNU6-741P-201ENST00000383889 107 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 Y_RNA.529-201ENST00000384586 119 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 MIR449B-201ENST00000384995 97 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 RNU2-33P-201ENST00000410344 192 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 AC007390.1-201ENST00000415722 356 ntBASIC3.59□□□□□ -1.83
PTCHD3Q3KNS1 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 129 ms