Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC099786.3-201ENST00000565735 1410 ntBASIC2.49□□□□□ -2.01
MSH6P52701 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.49□□□□□ -2.01
MSH6P52701 Y_RNA.191-201ENST00000363972 113 ntBASIC2.49□□□□□ -2.01
MSH6P52701 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
MSH6P52701 MIR144-201ENST00000384886 86 ntBASIC2.49□□□□□ -2.01
MSH6P52701 RNU2-25P-201ENST00000411041 191 ntBASIC2.49□□□□□ -2.01
MSH6P52701 MTCYBP38-201ENST00000417160 1123 ntBASIC2.49□□□□□ -2.01
MSH6P52701 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC2.49□□□□□ -2.01
MSH6P52701 NDUFB4P7-201ENST00000423198 363 ntBASIC2.49□□□□□ -2.01
MSH6P52701 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC2.49□□□□□ -2.01
MSH6P52701 MTND1P31-201ENST00000449206 961 ntBASIC2.49□□□□□ -2.01
MSH6P52701 AL031183.1-201ENST00000457667 207 ntBASIC2.49□□□□□ -2.01
MSH6P52701 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC2.49□□□□□ -2.01
MSH6P52701 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC2.49□□□□□ -2.01
MSH6P52701 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC2.49□□□□□ -2.01
MSH6P52701 AP003497.1-201ENST00000528472 562 ntBASIC2.49□□□□□ -2.01
MSH6P52701 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC2.49□□□□□ -2.01
MSH6P52701 ACTR3BP3-201ENST00000565577 979 ntBASIC2.49□□□□□ -2.01
MSH6P52701 AP005136.1-201ENST00000579765 429 ntBASIC2.49□□□□□ -2.01
MSH6P52701 AC103987.3-201ENST00000582071 292 ntBASIC2.49□□□□□ -2.01
MSH6P52701 MIR5194-201ENST00000582634 120 ntBASIC2.49□□□□□ -2.01
MSH6P52701 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.49□□□□□ -2.01
MSH6P52701 AC002984.1-201ENST00000591692 448 ntBASIC2.49□□□□□ -2.01
MSH6P52701 BBIP1P1-201ENST00000602999 279 ntBASIC2.49□□□□□ -2.01
MSH6P52701 NUTF2P8-201ENST00000604593 363 ntBASIC2.49□□□□□ -2.01
MSH6P52701 AC004067.1-201ENST00000608733 700 ntBASIC2.49□□□□□ -2.01
MSH6P52701 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.48□□□□□ -2.01
MSH6P52701 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC2.48□□□□□ -2.01
MSH6P52701 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.48□□□□□ -2.01
MSH6P52701 AC087359.1-201ENST00000508335 1740 ntBASIC2.48□□□□□ -2.01
MSH6P52701 AC005832.2-201ENST00000538921 1430 ntBASIC2.48□□□□□ -2.01
MSH6P52701 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
MSH6P52701 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
MSH6P52701 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.48□□□□□ -2.01
MSH6P52701 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
MSH6P52701 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
MSH6P52701 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
MSH6P52701 RNA5SP139-201ENST00000364340 117 ntBASIC2.48□□□□□ -2.01
MSH6P52701 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.48□□□□□ -2.01
MSH6P52701 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.48□□□□□ -2.01
MSH6P52701 RPL21P1-201ENST00000399532 476 ntBASIC2.48□□□□□ -2.01
MSH6P52701 AC018630.2-202ENST00000422992 927 ntBASIC2.48□□□□□ -2.01
MSH6P52701 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.48□□□□□ -2.01
MSH6P52701 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC2.48□□□□□ -2.01
MSH6P52701 AC092573.2-201ENST00000434546 243 ntBASIC2.48□□□□□ -2.01
MSH6P52701 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.48□□□□□ -2.01
MSH6P52701 AC010099.1-201ENST00000455434 375 ntBASIC2.48□□□□□ -2.01
MSH6P52701 AC080013.2-201ENST00000460866 323 ntBASIC2.48□□□□□ -2.01
MSH6P52701 RPL30P5-201ENST00000494923 336 ntBASIC2.48□□□□□ -2.01
MSH6P52701 UBE2V1P12-201ENST00000503954 474 ntBASIC2.48□□□□□ -2.01
MSH6P52701 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC2.48□□□□□ -2.01
MSH6P52701 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC2.48□□□□□ -2.01
MSH6P52701 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC2.48□□□□□ -2.01
MSH6P52701 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC2.48□□□□□ -2.01
MSH6P52701 AC007115.1-201ENST00000546853 234 ntBASIC2.48□□□□□ -2.01
MSH6P52701 AC009712.1-201ENST00000564938 316 ntBASIC2.48□□□□□ -2.01
MSH6P52701 AC022662.1-201ENST00000580252 331 ntBASIC2.48□□□□□ -2.01
MSH6P52701 MIR3609-201ENST00000582661 80 ntBASIC2.48□□□□□ -2.01
MSH6P52701 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC2.48□□□□□ -2.01
MSH6P52701 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC2.48□□□□□ -2.01
MSH6P52701 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
MSH6P52701 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.47□□□□□ -2.01
MSH6P52701 RNU5A-1-201ENST00000362698 116 ntBASIC2.47□□□□□ -2.01
MSH6P52701 RNU5E-8P-201ENST00000363502 116 ntBASIC2.47□□□□□ -2.01
MSH6P52701 RNU6-1180P-201ENST00000364935 107 ntBASIC2.47□□□□□ -2.01
MSH6P52701 RNU6-1207P-201ENST00000384343 107 ntBASIC2.47□□□□□ -2.01
MSH6P52701 RNU6-1242P-201ENST00000391052 103 ntBASIC2.47□□□□□ -2.01
MSH6P52701 BX119904.4-201ENST00000424402 301 ntBASIC2.47□□□□□ -2.01
MSH6P52701 AC092648.1-201ENST00000425870 423 ntBASIC2.47□□□□□ -2.01
MSH6P52701 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.47□□□□□ -2.01
MSH6P52701 USP9YP24-201ENST00000434374 697 ntBASIC2.47□□□□□ -2.01
MSH6P52701 AC009238.1-201ENST00000442165 424 ntBASIC2.47□□□□□ -2.01
MSH6P52701 USP9YP17-201ENST00000444617 696 ntBASIC2.47□□□□□ -2.01
MSH6P52701 AC009237.6-201ENST00000446969 424 ntBASIC2.47□□□□□ -2.01
MSH6P52701 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC2.47□□□□□ -2.01
MSH6P52701 USP9YP10-201ENST00000454868 628 ntBASIC2.47□□□□□ -2.01
MSH6P52701 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC2.47□□□□□ -2.01
MSH6P52701 AL121594.1-201ENST00000475906 575 ntBASIC2.47□□□□□ -2.01
MSH6P52701 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
MSH6P52701 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC2.47□□□□□ -2.01
MSH6P52701 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC2.47□□□□□ -2.01
MSH6P52701 AL132857.1-201ENST00000555180 708 ntBASIC2.47□□□□□ -2.01
MSH6P52701 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.47□□□□□ -2.01
MSH6P52701 AC006270.3-201ENST00000605967 1036 ntBASIC2.47□□□□□ -2.01
MSH6P52701 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC2.47□□□□□ -2.01
MSH6P52701 RMST_2.1-201ENST00000617263 136 ntBASIC2.47□□□□□ -2.01
MSH6P52701 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC2.46□□□□□ -2.01
MSH6P52701 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.46□□□□□ -2.02
MSH6P52701 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC2.46□□□□□ -2.02
MSH6P52701 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
MSH6P52701 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC2.46□□□□□ -2.02
MSH6P52701 RNU6-925P-201ENST00000384629 104 ntBASIC2.46□□□□□ -2.02
MSH6P52701 USP9YP33-201ENST00000412220 421 ntBASIC2.46□□□□□ -2.02
MSH6P52701 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC2.46□□□□□ -2.02
MSH6P52701 RPL23AP39-201ENST00000415533 405 ntBASIC2.46□□□□□ -2.02
MSH6P52701 MTCO2P23-201ENST00000425216 680 ntBASIC2.46□□□□□ -2.02
MSH6P52701 AL356867.1-201ENST00000429623 299 ntBASIC2.46□□□□□ -2.02
MSH6P52701 USP9YP35-201ENST00000435696 412 ntBASIC2.46□□□□□ -2.02
MSH6P52701 TAAR7P-201ENST00000436141 242 ntBASIC2.46□□□□□ -2.02
MSH6P52701 MTCO2P20-201ENST00000437339 673 ntBASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms