Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PPP1R11P2-201ENST00000423543 382 ntBASIC2.13□□□□□ -2.07
BRCA1P38398 AMD1P1-201ENST00000457220 922 ntBASIC2.13□□□□□ -2.07
BRCA1P38398 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
BRCA1P38398 AC008837.2-201ENST00000513076 418 ntBASIC2.13□□□□□ -2.07
BRCA1P38398 AC022447.1-201ENST00000515358 464 ntBASIC2.13□□□□□ -2.07
BRCA1P38398 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.13□□□□□ -2.07
BRCA1P38398 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC2.13□□□□□ -2.07
BRCA1P38398 AC002984.1-201ENST00000591692 448 ntBASIC2.13□□□□□ -2.07
BRCA1P38398 AC010133.1-201ENST00000615809 842 ntBASIC2.13□□□□□ -2.07
BRCA1P38398 AL138955.1-201ENST00000622881 1040 ntBASIC2.13□□□□□ -2.07
BRCA1P38398 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.12□□□□□ -2.07
BRCA1P38398 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC2.12□□□□□ -2.07
BRCA1P38398 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
BRCA1P38398 RNA5SP138-201ENST00000365098 114 ntBASIC2.12□□□□□ -2.07
BRCA1P38398 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
BRCA1P38398 Y_RNA.408-201ENST00000383987 102 ntBASIC2.12□□□□□ -2.07
BRCA1P38398 Y_RNA.548-201ENST00000384656 105 ntBASIC2.12□□□□□ -2.07
BRCA1P38398 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC2.12□□□□□ -2.07
BRCA1P38398 MTCO2P20-201ENST00000437339 673 ntBASIC2.12□□□□□ -2.07
BRCA1P38398 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC2.12□□□□□ -2.07
BRCA1P38398 AC109486.1-201ENST00000486833 374 ntBASIC2.12□□□□□ -2.07
BRCA1P38398 AC138853.1-201ENST00000503549 823 ntBASIC2.12□□□□□ -2.07
BRCA1P38398 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.12□□□□□ -2.07
BRCA1P38398 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC2.12□□□□□ -2.07
BRCA1P38398 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC2.12□□□□□ -2.07
BRCA1P38398 MIR4421-201ENST00000578133 69 ntBASIC2.12□□□□□ -2.07
BRCA1P38398 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.12□□□□□ -2.07
BRCA1P38398 RPL21P136-201ENST00000605378 396 ntBASIC2.12□□□□□ -2.07
BRCA1P38398 AC079395.3-201ENST00000615161 484 ntBASIC2.12□□□□□ -2.07
BRCA1P38398 AC109809.1-201ENST00000619665 545 ntBASIC2.12□□□□□ -2.07
BRCA1P38398 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC2.12□□□□□ -2.07
BRCA1P38398 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.12□□□□□ -2.07
BRCA1P38398 DDX43P2-201ENST00000604753 1354 ntBASIC2.12□□□□□ -2.07
BRCA1P38398 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
BRCA1P38398 PCF11-AS1-201ENST00000602322 1516 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
BRCA1P38398 RNU6-114P-201ENST00000384704 105 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
BRCA1P38398 AL590084.1-201ENST00000407885 387 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.11□□□□□ -2.07
BRCA1P38398 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
BRCA1P38398 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.11□□□□□ -2.07
BRCA1P38398 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC2.11□□□□□ -2.07
BRCA1P38398 RNU5F-8P-201ENST00000515941 111 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 RNU6-1225P-201ENST00000516336 65 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 IGLV3-17-201ENST00000519099 244 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 AP003497.1-201ENST00000528472 562 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC2.11□□□□□ -2.07
BRCA1P38398 NACAP3-201ENST00000552100 481 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 AL391261.3-201ENST00000557194 520 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 AC009712.1-201ENST00000564938 316 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.11□□□□□ -2.07
BRCA1P38398 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC2.11□□□□□ -2.07
BRCA1P38398 AC023824.2-201ENST00000566185 400 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 RPS3AP23-202ENST00000574601 686 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 MIR4452-201ENST00000583004 71 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC2.11□□□□□ -2.07
BRCA1P38398 HMGN2P15-201ENST00000585707 270 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 AL512598.1-201ENST00000610158 273 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 AC013476.2-201ENST00000614456 459 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
BRCA1P38398 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.11□□□□□ -2.07
BRCA1P38398 RPL21P75-201ENST00000396599 483 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 RPL21P28-201ENST00000401418 483 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 AL592114.1-201ENST00000403842 483 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 Z75741.2-201ENST00000417272 1167 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 USP9YP27-201ENST00000418455 438 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 HMGB1P9-201ENST00000429856 646 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 BNIP3P2-201ENST00000441221 577 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC2.11□□□□□ -2.07
BRCA1P38398 MTND2P24-201ENST00000453434 806 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 OFD1P7Y-201ENST00000454643 1155 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 RNU7-23P-201ENST00000459465 62 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 RPL21P39-201ENST00000463605 483 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 TOMM22P6-201ENST00000465035 409 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 AC011979.1-201ENST00000472300 483 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 RPL21P93-201ENST00000480465 489 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 AL160314.1-201ENST00000490836 438 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 AC093591.1-201ENST00000491435 481 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 RPL21P16-201ENST00000495531 483 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 AC113420.1-201ENST00000507903 571 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 MRPS36P2-201ENST00000512569 299 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC2.11□□□□□ -2.07
BRCA1P38398 RNA5SP291-201ENST00000517222 105 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC2.11□□□□□ -2.07
BRCA1P38398 CA1-215ENST00000522389 551 ntTSL 3 BASIC2.11□□□□□ -2.07
BRCA1P38398 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.11□□□□□ -2.07
BRCA1P38398 AC087441.2-201ENST00000529141 262 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC2.11□□□□□ -2.07
BRCA1P38398 AL354943.1-201ENST00000572103 781 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.11□□□□□ -2.07
BRCA1P38398 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.11□□□□□ -2.07
BRCA1P38398 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.11□□□□□ -2.07
BRCA1P38398 AL445264.1-201ENST00000621719 171 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 FO624990.1-201ENST00000636373 85 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
BRCA1P38398 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
BRCA1P38398 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.11□□□□□ -2.07
BRCA1P38398 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
BRCA1P38398 RNU6-637P-201ENST00000384050 107 ntBASIC2.1□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms