Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 SNORA20.2-201ENST00000383922 131 ntBASIC3.37□□□□□ -1.87
HOXC9P31274 RNU4-53P-201ENST00000410828 140 ntBASIC3.37□□□□□ -1.87
HOXC9P31274 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXC9P31274 AC010975.2-201ENST00000427781 588 ntBASIC3.37□□□□□ -1.87
HOXC9P31274 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.37□□□□□ -1.87
HOXC9P31274 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXC9P31274 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXC9P31274 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC3.37□□□□□ -1.87
HOXC9P31274 AL049714.1-201ENST00000466686 347 ntBASIC3.37□□□□□ -1.87
HOXC9P31274 AC010631.1-201ENST00000474150 156 ntBASIC3.37□□□□□ -1.87
HOXC9P31274 AC103975.1-201ENST00000482506 483 ntBASIC3.37□□□□□ -1.87
HOXC9P31274 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXC9P31274 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC3.37□□□□□ -1.87
HOXC9P31274 CDC42P4-201ENST00000510507 563 ntBASIC3.37□□□□□ -1.87
HOXC9P31274 RNU6-1220P-201ENST00000517126 108 ntBASIC3.37□□□□□ -1.87
HOXC9P31274 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXC9P31274 AC245505.1-201ENST00000556398 224 ntBASIC3.37□□□□□ -1.87
HOXC9P31274 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.37□□□□□ -1.87
HOXC9P31274 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXC9P31274 MIR4293-201ENST00000584305 78 ntBASIC3.37□□□□□ -1.87
HOXC9P31274 AC105224.1-201ENST00000587055 421 ntBASIC3.37□□□□□ -1.87
HOXC9P31274 NRBF2P1-201ENST00000587407 859 ntBASIC3.37□□□□□ -1.87
HOXC9P31274 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXC9P31274 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXC9P31274 AC010620.2-201ENST00000600135 313 ntBASIC3.37□□□□□ -1.87
HOXC9P31274 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXC9P31274 AC004696.1-201ENST00000614345 607 ntBASIC3.37□□□□□ -1.87
HOXC9P31274 AC015540.1-201ENST00000615828 501 ntBASIC3.37□□□□□ -1.87
HOXC9P31274 XIST_intron.1-201ENST00000619444 68 ntBASIC3.37□□□□□ -1.87
HOXC9P31274 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.37□□□□□ -1.87
HOXC9P31274 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXC9P31274 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXC9P31274 OR4G2P-202ENST00000641004 1759 ntBASIC3.36□□□□□ -1.87
HOXC9P31274 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXC9P31274 Z98742.3-201ENST00000418637 326 ntBASIC3.36□□□□□ -1.87
HOXC9P31274 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXC9P31274 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXC9P31274 RPL7L1P10-201ENST00000427790 463 ntBASIC3.36□□□□□ -1.87
HOXC9P31274 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXC9P31274 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXC9P31274 MTND2P24-201ENST00000453434 806 ntBASIC3.36□□□□□ -1.87
HOXC9P31274 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.36□□□□□ -1.87
HOXC9P31274 NTS-203ENST00000551529 801 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXC9P31274 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXC9P31274 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXC9P31274 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXC9P31274 BDH2P1-201ENST00000602288 736 ntBASIC3.36□□□□□ -1.87
HOXC9P31274 AL136363.2-201ENST00000604173 851 ntBASIC3.36□□□□□ -1.87
HOXC9P31274 AP002826.1-201ENST00000608835 315 ntBASIC3.36□□□□□ -1.87
HOXC9P31274 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXC9P31274 AC006020.1-201ENST00000420179 1854 ntBASIC3.36□□□□□ -1.87
HOXC9P31274 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXC9P31274 AC091152.2-201ENST00000591628 2569 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.35□□□□□ -1.87
HOXC9P31274 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.35□□□□□ -1.87
HOXC9P31274 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HOXC9P31274 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
HOXC9P31274 DEFB108F-201ENST00000344638 222 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 RNY1P12-201ENST00000364251 105 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 RNU5A-6P-201ENST00000384136 116 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 AL359511.1-201ENST00000402970 211 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 AL590004.2-201ENST00000404787 371 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 RNU2-36P-201ENST00000410361 191 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXC9P31274 AC018630.2-202ENST00000422992 927 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 MRPL50P4-201ENST00000446432 475 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 AC079448.1-201ENST00000449377 373 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXC9P31274 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC3.35□□□□□ -1.87
HOXC9P31274 RPS3AP17-201ENST00000472594 777 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXC9P31274 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXC9P31274 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC3.35□□□□□ -1.87
HOXC9P31274 MTND2P33-201ENST00000506452 1031 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 RNA5SP468-201ENST00000516782 93 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 MTCO2P4-201ENST00000517968 247 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 AC022616.3-201ENST00000523940 148 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 ARL2BPP2-201ENST00000550907 489 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 AL391840.1-201ENST00000571144 367 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 AC007336.1-201ENST00000576365 3828 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXC9P31274 AC245014.2-201ENST00000603689 287 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 AL136363.1-201ENST00000605349 337 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 AC246785.4-201ENST00000605374 287 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 AC012557.2-201ENST00000605919 418 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 SNHG22-203ENST00000617833 660 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 MIR4275-201ENST00000636486 87 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.35□□□□□ -1.87
HOXC9P31274 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
HOXC9P31274 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXC9P31274 MAPK10-362ENST00000641864 4484 ntBASIC3.34□□□□□ -1.87
HOXC9P31274 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
HOXC9P31274 U8.2-201ENST00000363156 134 ntBASIC3.34□□□□□ -1.87
HOXC9P31274 SNORD56.2-201ENST00000363242 71 ntBASIC3.34□□□□□ -1.87
HOXC9P31274 Y_RNA.296-201ENST00000364930 108 ntBASIC3.34□□□□□ -1.87
HOXC9P31274 RNU6-259P-201ENST00000383999 107 ntBASIC3.34□□□□□ -1.87
HOXC9P31274 MIR592-201ENST00000384959 97 ntBASIC3.34□□□□□ -1.87
HOXC9P31274 Y_RNA.582-201ENST00000391023 95 ntBASIC3.34□□□□□ -1.87
HOXC9P31274 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HOXC9P31274 AC080125.1-201ENST00000414888 684 ntBASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms