Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 RNU6-677P-201ENST00000516914 101 ntBASIC2.82□□□□□ -1.96
VIMP08670 RNU6-143P-201ENST00000516942 93 ntBASIC2.82□□□□□ -1.96
VIMP08670 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC2.82□□□□□ -1.96
VIMP08670 AC009163.5-201ENST00000575421 637 ntBASIC2.82□□□□□ -1.96
VIMP08670 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC2.82□□□□□ -1.96
VIMP08670 AC005771.1-201ENST00000585581 349 ntBASIC2.82□□□□□ -1.96
VIMP08670 AC011471.1-201ENST00000585766 187 ntBASIC2.82□□□□□ -1.96
VIMP08670 Z99497.2-201ENST00000603634 310 ntBASIC2.82□□□□□ -1.96
VIMP08670 Z94722.1-201ENST00000604328 474 ntBASIC2.82□□□□□ -1.96
VIMP08670 AC245389.1-201ENST00000605141 529 ntBASIC2.82□□□□□ -1.96
VIMP08670 AC022893.3-201ENST00000607665 437 ntBASIC2.82□□□□□ -1.96
VIMP08670 Z99571.1-201ENST00000636677 394 ntBASIC2.82□□□□□ -1.96
VIMP08670 AC012442.3-202ENST00000636742 206 ntBASIC2.82□□□□□ -1.96
VIMP08670 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.82□□□□□ -1.96
VIMP08670 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
VIMP08670 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
VIMP08670 ZNF271P-202ENST00000465539 1970 ntBASIC2.81□□□□□ -1.96
VIMP08670 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC2.81□□□□□ -1.96
VIMP08670 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.81□□□□□ -1.96
VIMP08670 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
VIMP08670 FGF7P2-201ENST00000332473 296 ntBASIC2.81□□□□□ -1.96
VIMP08670 SNORA9.2-201ENST00000365361 133 ntBASIC2.81□□□□□ -1.96
VIMP08670 RNU6-658P-201ENST00000384606 106 ntBASIC2.81□□□□□ -1.96
VIMP08670 RNU2-8P-201ENST00000410727 190 ntBASIC2.81□□□□□ -1.96
VIMP08670 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.81□□□□□ -1.96
VIMP08670 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC2.81□□□□□ -1.96
VIMP08670 AL353729.1-201ENST00000425044 720 ntBASIC2.81□□□□□ -1.96
VIMP08670 AC098614.2-201ENST00000426040 255 ntBASIC2.81□□□□□ -1.96
VIMP08670 HMGB1P9-201ENST00000429856 646 ntBASIC2.81□□□□□ -1.96
VIMP08670 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.81□□□□□ -1.96
VIMP08670 AC104850.1-201ENST00000435940 476 ntBASIC2.81□□□□□ -1.96
VIMP08670 CR769767.1-201ENST00000436337 346 ntBASIC2.81□□□□□ -1.96
VIMP08670 AL022238.1-201ENST00000442557 355 ntBASIC2.81□□□□□ -1.96
VIMP08670 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC2.81□□□□□ -1.96
VIMP08670 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VIMP08670 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.81□□□□□ -1.96
VIMP08670 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC2.81□□□□□ -1.96
VIMP08670 AC113155.1-201ENST00000511141 769 ntBASIC2.81□□□□□ -1.96
VIMP08670 RNU6-1220P-201ENST00000517126 108 ntBASIC2.81□□□□□ -1.96
VIMP08670 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC2.81□□□□□ -1.96
VIMP08670 AC022616.3-201ENST00000523940 148 ntBASIC2.81□□□□□ -1.96
VIMP08670 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC2.81□□□□□ -1.96
VIMP08670 AP002404.1-201ENST00000532005 451 ntBASIC2.81□□□□□ -1.96
VIMP08670 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC2.81□□□□□ -1.96
VIMP08670 GLYCAM1-201ENST00000546596 285 ntBASIC2.81□□□□□ -1.96
VIMP08670 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.81□□□□□ -1.96
VIMP08670 CLIC4P2-201ENST00000601934 717 ntBASIC2.81□□□□□ -1.96
VIMP08670 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.81□□□□□ -1.96
VIMP08670 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.81□□□□□ -1.96
VIMP08670 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC2.81□□□□□ -1.96
VIMP08670 CR381653.2-201ENST00000624041 768 ntBASIC2.81□□□□□ -1.96
VIMP08670 AL512643.1-201ENST00000635735 524 ntBASIC2.81□□□□□ -1.96
VIMP08670 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.81□□□□□ -1.96
VIMP08670 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VIMP08670 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
VIMP08670 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC2.8□□□□□ -1.96
VIMP08670 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.8□□□□□ -1.96
VIMP08670 MTND4P35-201ENST00000604257 1375 ntBASIC2.8□□□□□ -1.96
VIMP08670 AC073343.1-201ENST00000328239 651 ntBASIC2.8□□□□□ -1.96
VIMP08670 MIR6073-201ENST00000352083 89 ntBASIC2.8□□□□□ -1.96
VIMP08670 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
VIMP08670 RNU6-190P-201ENST00000384154 102 ntBASIC2.8□□□□□ -1.96
VIMP08670 RPS3AP36-201ENST00000398190 775 ntBASIC2.8□□□□□ -1.96
VIMP08670 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.8□□□□□ -1.96
VIMP08670 RNU6-195P-201ENST00000411352 109 ntBASIC2.8□□□□□ -1.96
VIMP08670 AC127391.1-201ENST00000411737 98 ntBASIC2.8□□□□□ -1.96
VIMP08670 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.8□□□□□ -1.96
VIMP08670 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.8□□□□□ -1.96
VIMP08670 AC098831.1-201ENST00000440661 216 ntBASIC2.8□□□□□ -1.96
VIMP08670 AL033528.1-201ENST00000453780 140 ntBASIC2.8□□□□□ -1.96
VIMP08670 RNA5SP269-201ENST00000459032 137 ntBASIC2.8□□□□□ -1.96
VIMP08670 snoU109.1-201ENST00000459339 135 ntBASIC2.8□□□□□ -1.96
VIMP08670 RPL27AP5-201ENST00000469428 449 ntBASIC2.8□□□□□ -1.96
VIMP08670 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.8□□□□□ -1.96
VIMP08670 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC2.8□□□□□ -1.96
VIMP08670 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.8□□□□□ -1.96
VIMP08670 RPL37P25-201ENST00000507308 276 ntBASIC2.8□□□□□ -1.96
VIMP08670 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.8□□□□□ -1.96
VIMP08670 RNU6-703P-201ENST00000516946 107 ntBASIC2.8□□□□□ -1.96
VIMP08670 OR5B19P-201ENST00000531766 928 ntBASIC2.8□□□□□ -1.96
VIMP08670 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.8□□□□□ -1.96
VIMP08670 NACAP3-201ENST00000552100 481 ntBASIC2.8□□□□□ -1.96
VIMP08670 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC2.8□□□□□ -1.96
VIMP08670 AC060766.3-201ENST00000591442 263 ntBASIC2.8□□□□□ -1.96
VIMP08670 AL355598.1-201ENST00000604169 202 ntBASIC2.8□□□□□ -1.96
VIMP08670 AC025811.1-201ENST00000604312 472 ntBASIC2.8□□□□□ -1.96
VIMP08670 AC104237.2-201ENST00000612456 443 ntBASIC2.8□□□□□ -1.96
VIMP08670 AL133173.2-201ENST00000614270 90 ntBASIC2.8□□□□□ -1.96
VIMP08670 AC084757.4-201ENST00000616350 526 ntBASIC2.8□□□□□ -1.96
VIMP08670 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.8□□□□□ -1.96
VIMP08670 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
VIMP08670 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
VIMP08670 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.79□□□□□ -1.96
VIMP08670 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
VIMP08670 NACAP2-201ENST00000318548 624 ntBASIC2.79□□□□□ -1.96
VIMP08670 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.79□□□□□ -1.96
VIMP08670 SNORA20.2-201ENST00000383922 131 ntBASIC2.79□□□□□ -1.96
VIMP08670 RNU6-851P-201ENST00000384565 107 ntBASIC2.79□□□□□ -1.96
VIMP08670 Y_RNA.534-201ENST00000384599 112 ntBASIC2.79□□□□□ -1.96
VIMP08670 RNU6-297P-201ENST00000384636 107 ntBASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms