Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.05□□□□□ -1.92
CPSF3Q9UKF6 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 TEX21P-201ENST00000447107 1476 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 SNORA51.4-201ENST00000364993 124 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 RNU6-701P-201ENST00000384059 107 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 RPL23AP32-201ENST00000395315 459 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 MRPL42P2-201ENST00000403169 426 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 AL592148.1-201ENST00000413568 445 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 SEPT2P1-201ENST00000419651 180 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 AC006366.1-201ENST00000422002 759 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 AC093106.2-201ENST00000428212 385 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 AC104332.2-201ENST00000429959 156 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 AC087499.2-201ENST00000432861 149 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 AC105272.1-201ENST00000438604 198 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 AL033528.1-201ENST00000453780 140 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 AC009901.1-201ENST00000506703 541 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 AC117522.2-201ENST00000510049 657 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 RNU6-56P-201ENST00000516986 93 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 HPRT1P3-201ENST00000539521 576 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 AC010620.2-201ENST00000600135 313 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 AC119751.7-201ENST00000600494 245 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 SEPT7P9-203ENST00000604116 343 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 AC007619.2-201ENST00000605743 379 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 MIR7106-201ENST00000612419 65 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 LRRC77P-213ENST00000637727 880 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 MTND5P19-201ENST00000424872 1794 ntBASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CPSF3Q9UKF6 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 RNY4P34-201ENST00000364779 95 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 RNU6-7-201ENST00000364784 107 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 RNU6-8-201ENST00000365467 107 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 U8.9-201ENST00000365667 134 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 RNU6-14P-201ENST00000384630 106 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 SNORA26.7-201ENST00000391288 122 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 RNU6-195P-201ENST00000411352 109 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 ZNF90P2-204ENST00000419323 1075 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 SAR1AP4-201ENST00000429225 591 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 AC119618.1-201ENST00000434191 222 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 AC009961.2-201ENST00000435771 251 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 AC104850.1-201ENST00000435940 476 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 AL513043.1-201ENST00000439124 535 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 RPL21P2-201ENST00000440049 481 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 AL360221.1-201ENST00000445989 335 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 GAPDHP17-201ENST00000449858 1001 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 snoU109.1-201ENST00000459339 135 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 ARL4AP2-201ENST00000507378 601 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 AP002453.2-201ENST00000533503 320 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 AC010653.1-201ENST00000571108 881 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 ELOCP29-201ENST00000588193 334 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 AC008739.2-201ENST00000597006 317 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 AL358072.1-201ENST00000604156 575 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 AC087752.4-201ENST00000605911 462 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 AP001506.1-201ENST00000615444 211 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 AC002064.3-201ENST00000623448 346 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 AC084035.1-201ENST00000634543 607 ntBASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.03□□□□□ -1.92
CPSF3Q9UKF6 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.93
CPSF3Q9UKF6 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 RNU5E-6P-201ENST00000365574 115 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 MIR181A2-201ENST00000384863 110 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 U3.26-201ENST00000391236 204 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 RAC1P6-201ENST00000423911 575 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 USP9YP15-201ENST00000442391 422 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 MTCO1P19-201ENST00000443487 500 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 Z96811.1-201ENST00000445880 108 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 SNORD97-201ENST00000459187 142 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 AC087588.1-201ENST00000462203 316 ntBASIC3.02□□□□□ -1.93
CPSF3Q9UKF6 MTCO2P29-201ENST00000465212 189 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 161 ms