Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RNU6-1329P-201ENST00000365664 107 ntBASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 Y_RNA.618-201ENST00000410949 107 ntBASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 AL513331.1-201ENST00000411908 397 ntBASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 USP9YP30-201ENST00000430729 455 ntBASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 AC091286.1-201ENST00000431233 461 ntBASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 ABCF2P2-201ENST00000450549 296 ntBASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 RPL5P30-201ENST00000465511 891 ntBASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 AC009901.1-201ENST00000506703 541 ntBASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 Y_RNA.721-201ENST00000517207 102 ntBASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 SNORA70.24-201ENST00000517233 118 ntBASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 SNRPGP16-201ENST00000533275 226 ntBASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 AC091516.1-201ENST00000549191 703 ntBASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 MIR3200-201ENST00000580767 85 ntBASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 AL031601.2-202ENST00000622650 282 ntBASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 MIR6715B-201ENST00000637172 77 ntBASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 MAPK10-303ENST00000641324 3959 ntBASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 DDX18P3-201ENST00000404856 2007 ntBASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 Y_RNA.2-201ENST00000362330 96 ntBASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 RNU6-173P-201ENST00000364215 104 ntBASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 Y_RNA.557-201ENST00000384680 107 ntBASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 MIR34B-201ENST00000385076 84 ntBASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 AC093151.1-201ENST00000427711 313 ntBASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 AL731563.1-201ENST00000442202 214 ntBASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 HSPE1P6-201ENST00000479457 291 ntBASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 AC022493.2-201ENST00000506122 481 ntBASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 RNU6-475P-201ENST00000516073 104 ntBASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 AP002404.1-201ENST00000532005 451 ntBASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 AC005951.2-201ENST00000576282 495 ntBASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 AC073539.2-201ENST00000597113 165 ntBASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 VN1R107P-201ENST00000601784 209 ntBASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 PRR13P7-201ENST00000605538 430 ntBASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 AC006065.5-201ENST00000623427 349 ntBASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 AL732372.2-225ENST00000642124 456 ntBASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC87Q9NVE4 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
CCDC87Q9NVE4 SNORA60-201ENST00000362396 134 ntBASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 Y_RNA.47-201ENST00000362697 108 ntBASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 Y_RNA.455-201ENST00000384230 98 ntBASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 Y_RNA.527-201ENST00000384573 102 ntBASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 MT-TG-201ENST00000387429 68 ntBASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 RBMY1KP-201ENST00000423480 476 ntBASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 MTCO1P39-201ENST00000426148 480 ntBASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 AC096644.2-201ENST00000429278 159 ntBASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 AC099799.1-201ENST00000439809 192 ntBASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 GSTA11P-201ENST00000452866 669 ntBASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 MRPS35P2-201ENST00000508242 191 ntBASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 APOOP4-201ENST00000513530 597 ntBASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 RNU6-143P-201ENST00000516942 93 ntBASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 AL161670.1-201ENST00000554348 137 ntBASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 LRRC37A5P-203ENST00000580181 585 ntBASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 AC107294.1-201ENST00000609524 467 ntBASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 AC005344.1-201ENST00000613391 459 ntBASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 AC007792.1-201ENST00000623023 402 ntBASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC87Q9NVE4 AC073346.2-201ENST00000624724 2058 ntBASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 LINC01355-201ENST00000566551 5444 ntBASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 AC005592.1-201ENST00000566527 1640 ntBASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC87Q9NVE4 ZNF285B-201ENST00000561698 1767 ntBASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 129.7 ms