Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AL365184.2-201ENST00000431139 435 ntBASIC3.15□□□□□ -1.91
NPHP3Q7Z494 AC090774.1-201ENST00000435925 246 ntBASIC3.15□□□□□ -1.91
NPHP3Q7Z494 GDI2P2-201ENST00000445131 608 ntBASIC3.15□□□□□ -1.91
NPHP3Q7Z494 AC117522.2-201ENST00000510049 657 ntBASIC3.15□□□□□ -1.91
NPHP3Q7Z494 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.15□□□□□ -1.91
NPHP3Q7Z494 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.15□□□□□ -1.91
NPHP3Q7Z494 RNU6-798P-201ENST00000516912 103 ntBASIC3.15□□□□□ -1.91
NPHP3Q7Z494 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC3.15□□□□□ -1.91
NPHP3Q7Z494 MTCYBP20-201ENST00000524239 1129 ntBASIC3.15□□□□□ -1.91
NPHP3Q7Z494 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.15□□□□□ -1.91
NPHP3Q7Z494 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.15□□□□□ -1.91
NPHP3Q7Z494 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.15□□□□□ -1.91
NPHP3Q7Z494 AP000403.1-201ENST00000603349 851 ntBASIC3.15□□□□□ -1.91
NPHP3Q7Z494 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC3.15□□□□□ -1.91
NPHP3Q7Z494 MIR7844-201ENST00000616161 122 ntBASIC3.15□□□□□ -1.91
NPHP3Q7Z494 MIR6130-201ENST00000619419 109 ntBASIC3.15□□□□□ -1.91
NPHP3Q7Z494 AC027309.3-201ENST00000623419 351 ntBASIC3.15□□□□□ -1.91
NPHP3Q7Z494 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.15□□□□□ -1.91
NPHP3Q7Z494 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.15□□□□□ -1.91
NPHP3Q7Z494 MIR219B-201ENST00000637023 88 ntBASIC3.15□□□□□ -1.91
NPHP3Q7Z494 MIR3974-201ENST00000637126 96 ntBASIC3.15□□□□□ -1.91
NPHP3Q7Z494 MAPK10-322ENST00000641485 4530 ntBASIC3.15□□□□□ -1.91
NPHP3Q7Z494 AC110774.1-201ENST00000623567 2018 ntBASIC3.14□□□□□ -1.91
NPHP3Q7Z494 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.14□□□□□ -1.91
NPHP3Q7Z494 CCT4P2-201ENST00000233836 1548 ntBASIC3.14□□□□□ -1.91
NPHP3Q7Z494 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
NPHP3Q7Z494 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
NPHP3Q7Z494 U8.13-201ENST00000390842 128 ntBASIC3.14□□□□□ -1.91
NPHP3Q7Z494 RPL7P46-201ENST00000425129 740 ntBASIC3.14□□□□□ -1.91
NPHP3Q7Z494 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC3.14□□□□□ -1.91
NPHP3Q7Z494 AC018634.1-201ENST00000437554 401 ntBASIC3.14□□□□□ -1.91
NPHP3Q7Z494 MTCO1P42-201ENST00000457379 726 ntBASIC3.14□□□□□ -1.91
NPHP3Q7Z494 AL049874.1-201ENST00000489560 388 ntBASIC3.14□□□□□ -1.91
NPHP3Q7Z494 AC034222.1-201ENST00000494052 532 ntBASIC3.14□□□□□ -1.91
NPHP3Q7Z494 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.14□□□□□ -1.91
NPHP3Q7Z494 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.14□□□□□ -1.91
NPHP3Q7Z494 AC116347.2-201ENST00000514912 523 ntBASIC3.14□□□□□ -1.91
NPHP3Q7Z494 AC106038.2-201ENST00000520706 568 ntBASIC3.14□□□□□ -1.91
NPHP3Q7Z494 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC3.14□□□□□ -1.91
NPHP3Q7Z494 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.14□□□□□ -1.91
NPHP3Q7Z494 PCMTD1P2-201ENST00000565017 355 ntBASIC3.14□□□□□ -1.91
NPHP3Q7Z494 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC3.14□□□□□ -1.91
NPHP3Q7Z494 AC060771.1-201ENST00000582031 164 ntBASIC3.14□□□□□ -1.91
NPHP3Q7Z494 AC091965.4-201ENST00000607691 587 ntBASIC3.14□□□□□ -1.91
NPHP3Q7Z494 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.14□□□□□ -1.91
NPHP3Q7Z494 AL138880.2-201ENST00000616214 239 ntBASIC3.14□□□□□ -1.91
NPHP3Q7Z494 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.14□□□□□ -1.91
NPHP3Q7Z494 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
NPHP3Q7Z494 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
NPHP3Q7Z494 ADAM3A-203ENST00000461344 2157 ntBASIC3.13□□□□□ -1.91
NPHP3Q7Z494 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
NPHP3Q7Z494 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.13□□□□□ -1.91
NPHP3Q7Z494 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.13□□□□□ -1.91
NPHP3Q7Z494 RNU5F-6P-201ENST00000362979 116 ntBASIC3.13□□□□□ -1.91
NPHP3Q7Z494 MT-TH-201ENST00000387441 69 ntBASIC3.13□□□□□ -1.91
NPHP3Q7Z494 CCNG1P1-201ENST00000406783 885 ntBASIC3.13□□□□□ -1.91
NPHP3Q7Z494 AC090960.1-201ENST00000421072 306 ntBASIC3.13□□□□□ -1.91
NPHP3Q7Z494 RPS27AP14-201ENST00000422868 454 ntBASIC3.13□□□□□ -1.91
NPHP3Q7Z494 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.13□□□□□ -1.91
NPHP3Q7Z494 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.13□□□□□ -1.91
NPHP3Q7Z494 RPL37P21-201ENST00000435890 276 ntBASIC3.13□□□□□ -1.91
NPHP3Q7Z494 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
NPHP3Q7Z494 MTND1P30-201ENST00000441241 901 ntBASIC3.13□□□□□ -1.91
NPHP3Q7Z494 SNRPGP6-201ENST00000451124 220 ntBASIC3.13□□□□□ -1.91
NPHP3Q7Z494 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.13□□□□□ -1.91
NPHP3Q7Z494 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
NPHP3Q7Z494 AF131216.2-201ENST00000512316 564 ntBASIC3.13□□□□□ -1.91
NPHP3Q7Z494 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.13□□□□□ -1.91
NPHP3Q7Z494 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.13□□□□□ -1.91
NPHP3Q7Z494 RNU6-826P-201ENST00000516827 104 ntBASIC3.13□□□□□ -1.91
NPHP3Q7Z494 RNU6-295P-201ENST00000516901 104 ntBASIC3.13□□□□□ -1.91
NPHP3Q7Z494 SNORA31.22-201ENST00000517204 135 ntBASIC3.13□□□□□ -1.91
NPHP3Q7Z494 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.13□□□□□ -1.91
NPHP3Q7Z494 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC3.13□□□□□ -1.91
NPHP3Q7Z494 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.13□□□□□ -1.91
NPHP3Q7Z494 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.13□□□□□ -1.91
NPHP3Q7Z494 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.13□□□□□ -1.91
NPHP3Q7Z494 AC091489.2-201ENST00000566263 604 ntBASIC3.13□□□□□ -1.91
NPHP3Q7Z494 AL022161.1-201ENST00000604390 213 ntBASIC3.13□□□□□ -1.91
NPHP3Q7Z494 AL031775.1-201ENST00000607014 887 ntBASIC3.13□□□□□ -1.91
NPHP3Q7Z494 AC079597.1-201ENST00000624306 508 ntBASIC3.13□□□□□ -1.91
NPHP3Q7Z494 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
NPHP3Q7Z494 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.13□□□□□ -1.91
NPHP3Q7Z494 AC092125.1-201ENST00000562568 1995 ntBASIC3.12□□□□□ -1.91
NPHP3Q7Z494 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
NPHP3Q7Z494 MTND5P29-201ENST00000458676 1807 ntBASIC3.12□□□□□ -1.91
NPHP3Q7Z494 MTND5P33-201ENST00000571250 1450 ntBASIC3.12□□□□□ -1.91
NPHP3Q7Z494 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.12□□□□□ -1.91
NPHP3Q7Z494 Y_RNA.164-201ENST00000363709 102 ntBASIC3.12□□□□□ -1.91
NPHP3Q7Z494 RNU6-1078P-201ENST00000364522 103 ntBASIC3.12□□□□□ -1.91
NPHP3Q7Z494 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
NPHP3Q7Z494 SNORA26.7-201ENST00000391288 122 ntBASIC3.12□□□□□ -1.91
NPHP3Q7Z494 SNORA26.9-201ENST00000391322 122 ntBASIC3.12□□□□□ -1.91
NPHP3Q7Z494 AL359704.1-201ENST00000411586 781 ntBASIC3.12□□□□□ -1.91
NPHP3Q7Z494 Z99497.1-201ENST00000421282 135 ntBASIC3.12□□□□□ -1.91
NPHP3Q7Z494 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC3.12□□□□□ -1.91
NPHP3Q7Z494 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.12□□□□□ -1.91
NPHP3Q7Z494 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC3.12□□□□□ -1.91
NPHP3Q7Z494 MTND2P22-201ENST00000444325 1033 ntBASIC3.12□□□□□ -1.91
NPHP3Q7Z494 MTATP6P26-201ENST00000445926 662 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 121 ms