Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.69□□□□□ -2.3
CSPG4Q6UVK1 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
CSPG4Q6UVK1 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC0.69□□□□□ -2.3
CSPG4Q6UVK1 RNA5SP347-201ENST00000362445 119 ntBASIC0.69□□□□□ -2.3
CSPG4Q6UVK1 SNORA3A-201ENST00000364113 130 ntBASIC0.69□□□□□ -2.3
CSPG4Q6UVK1 SNORA1.3-201ENST00000384676 136 ntBASIC0.69□□□□□ -2.3
CSPG4Q6UVK1 MIR493-201ENST00000385254 89 ntBASIC0.69□□□□□ -2.3
CSPG4Q6UVK1 RNU2-70P-201ENST00000410718 179 ntBASIC0.69□□□□□ -2.3
CSPG4Q6UVK1 Z99497.1-201ENST00000421282 135 ntBASIC0.69□□□□□ -2.3
CSPG4Q6UVK1 LAMTOR3P1-201ENST00000428620 370 ntBASIC0.69□□□□□ -2.3
CSPG4Q6UVK1 TRIM60P3Y-201ENST00000432201 673 ntBASIC0.69□□□□□ -2.3
CSPG4Q6UVK1 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC0.69□□□□□ -2.3
CSPG4Q6UVK1 RPS24P6-201ENST00000452670 400 ntBASIC0.69□□□□□ -2.3
CSPG4Q6UVK1 SETP11-201ENST00000473027 690 ntBASIC0.69□□□□□ -2.3
CSPG4Q6UVK1 AC087272.1-201ENST00000523624 533 ntBASIC0.69□□□□□ -2.3
CSPG4Q6UVK1 CIR1P1-201ENST00000524055 1133 ntBASIC0.69□□□□□ -2.3
CSPG4Q6UVK1 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC0.69□□□□□ -2.3
CSPG4Q6UVK1 AC010809.3-201ENST00000621310 641 ntBASIC0.69□□□□□ -2.3
CSPG4Q6UVK1 AC121333.1-201ENST00000567488 2709 ntBASIC0.69□□□□□ -2.3
CSPG4Q6UVK1 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.68□□□□□ -2.3
CSPG4Q6UVK1 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC0.68□□□□□ -2.3
CSPG4Q6UVK1 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC0.68□□□□□ -2.3
CSPG4Q6UVK1 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.68□□□□□ -2.3
CSPG4Q6UVK1 Y_RNA.136-201ENST00000363444 102 ntBASIC0.68□□□□□ -2.3
CSPG4Q6UVK1 RNA5SP193-201ENST00000410353 107 ntBASIC0.68□□□□□ -2.3
CSPG4Q6UVK1 VN1R36P-201ENST00000414936 291 ntBASIC0.68□□□□□ -2.3
CSPG4Q6UVK1 AL356320.2-201ENST00000417263 507 ntBASIC0.68□□□□□ -2.3
CSPG4Q6UVK1 AC006548.1-201ENST00000427470 102 ntBASIC0.68□□□□□ -2.3
CSPG4Q6UVK1 RABEPKP1-201ENST00000440529 1026 ntBASIC0.68□□□□□ -2.3
CSPG4Q6UVK1 AL022238.1-201ENST00000442557 355 ntBASIC0.68□□□□□ -2.3
CSPG4Q6UVK1 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC0.68□□□□□ -2.3
CSPG4Q6UVK1 AC087588.1-201ENST00000462203 316 ntBASIC0.68□□□□□ -2.3
CSPG4Q6UVK1 SNORA48.11-201ENST00000517015 89 ntBASIC0.68□□□□□ -2.3
CSPG4Q6UVK1 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC0.68□□□□□ -2.3
CSPG4Q6UVK1 AC073592.7-201ENST00000623659 507 ntBASIC0.68□□□□□ -2.3
CSPG4Q6UVK1 AC067863.3-201ENST00000624172 122 ntBASIC0.68□□□□□ -2.3
CSPG4Q6UVK1 CR381572.1-201ENST00000625098 102 ntBASIC0.68□□□□□ -2.3
CSPG4Q6UVK1 FAM157B-203ENST00000639350 358 ntBASIC0.68□□□□□ -2.3
CSPG4Q6UVK1 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC0.68□□□□□ -2.3
CSPG4Q6UVK1 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC0.68□□□□□ -2.3
CSPG4Q6UVK1 ZNF736P3Y-201ENST00000428264 1465 ntBASIC0.68□□□□□ -2.3
CSPG4Q6UVK1 HAUS6P2-201ENST00000433254 2404 ntBASIC0.68□□□□□ -2.3
CSPG4Q6UVK1 SNORA16B-201ENST00000364674 135 ntBASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 RNU6-418P-201ENST00000384035 107 ntBASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 RNU6-185P-201ENST00000384421 107 ntBASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 AL139397.2-201ENST00000404529 772 ntBASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 RNU2-21P-201ENST00000410368 188 ntBASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 AC099677.1-201ENST00000420575 175 ntBASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 NCOR1P1-202ENST00000486162 291 ntBASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 AC026801.1-201ENST00000497178 464 ntBASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 EIF4EP3-201ENST00000498782 656 ntBASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 COL6A4P2-205ENST00000509855 506 ntBASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 AC243829.6-201ENST00000612652 106 ntBASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 AC109454.4-201ENST00000623411 649 ntBASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 MIR329-2-201ENST00000385029 84 ntBASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 AL512604.1-201ENST00000404812 257 ntBASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 MIR1265-201ENST00000408444 86 ntBASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC0.67□□□□□ -2.3
CSPG4Q6UVK1 SNORA38-201ENST00000363946 132 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 RNU6-19P-201ENST00000384718 107 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 AC004022.2-201ENST00000413824 193 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 TMEM167AP1-201ENST00000423409 219 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 AC004383.1-201ENST00000438135 289 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 snoU13.19-201ENST00000459148 104 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 AC008379.1-201ENST00000463655 464 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 AC027575.1-201ENST00000481064 460 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 VN1R81P-201ENST00000602085 372 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 AC004908.2-201ENST00000609090 574 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 CBX3P1-201ENST00000325243 554 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 RNA5SP125-201ENST00000364843 120 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 MIR147B-201ENST00000390185 80 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 RNU2-41P-201ENST00000410991 178 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 Z95118.1-201ENST00000421372 247 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 AC079780.1-201ENST00000428259 207 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 TRBV26OR9-2-201ENST00000432077 293 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 AL357134.1-201ENST00000445848 426 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 C1DP3-201ENST00000455013 423 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 AC096751.1-202ENST00000502691 1067 ntBASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 127.2 ms