Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 Y_RNA.668-201ENST00000516233 93 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 RNU6-635P-201ENST00000516651 102 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 AC009812.2-201ENST00000517657 457 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC4.1□□□□□ -1.75
USP39Q53GS9 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC4.1□□□□□ -1.75
USP39Q53GS9 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
USP39Q53GS9 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
USP39Q53GS9 CYCSP30-201ENST00000546447 172 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC4.1□□□□□ -1.75
USP39Q53GS9 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.1□□□□□ -1.75
USP39Q53GS9 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC4.1□□□□□ -1.75
USP39Q53GS9 AC113195.1-201ENST00000579952 141 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC4.1□□□□□ -1.75
USP39Q53GS9 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC4.1□□□□□ -1.75
USP39Q53GS9 AC104695.3-201ENST00000604052 296 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 AC018889.1-201ENST00000605372 397 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 AL365434.2-201ENST00000607979 234 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 AC006157.1-201ENST00000611750 366 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 AC064801.1-201ENST00000612025 407 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 AC084757.4-201ENST00000616350 526 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 AC103705.1-201ENST00000619013 241 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 AC025034.2-201ENST00000623264 286 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 AL136313.1-201ENST00000624804 202 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 MIR4496-201ENST00000635896 61 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
USP39Q53GS9 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
USP39Q53GS9 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
USP39Q53GS9 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.09□□□□□ -1.75
USP39Q53GS9 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
USP39Q53GS9 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC4.09□□□□□ -1.75
USP39Q53GS9 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.75
USP39Q53GS9 RNU6-188P-201ENST00000364207 107 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 RNU5E-6P-201ENST00000365574 115 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 Y_RNA.455-201ENST00000384230 98 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 RNU6-328P-201ENST00000390887 106 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 AL136372.1-201ENST00000403060 228 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 LAP3P1-201ENST00000403648 294 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 RN7SKP156-201ENST00000410308 342 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.09□□□□□ -1.75
USP39Q53GS9 RPL7P46-201ENST00000425129 740 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 AC093151.1-201ENST00000427711 313 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC4.09□□□□□ -1.75
USP39Q53GS9 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC4.09□□□□□ -1.75
USP39Q53GS9 RPL23AP89-201ENST00000439324 255 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
USP39Q53GS9 HMGN2P21-201ENST00000447764 270 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.09□□□□□ -1.75
USP39Q53GS9 GSTA11P-201ENST00000452866 669 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 PRSS3P4-201ENST00000453323 162 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC4.09□□□□□ -1.75
USP39Q53GS9 snoU13.24-201ENST00000458998 104 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 RN7SL585P-201ENST00000470538 280 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.09□□□□□ -1.75
USP39Q53GS9 RPL29P14-201ENST00000495837 428 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 RNU6-388P-201ENST00000517012 105 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 RNU6-389P-201ENST00000517048 105 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 RNU4-60P-201ENST00000517239 135 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 AC087854.1-201ENST00000519706 414 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC4.09□□□□□ -1.75
USP39Q53GS9 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.09□□□□□ -1.75
USP39Q53GS9 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
USP39Q53GS9 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC4.09□□□□□ -1.75
USP39Q53GS9 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.09□□□□□ -1.75
USP39Q53GS9 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.09□□□□□ -1.75
USP39Q53GS9 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC4.09□□□□□ -1.75
USP39Q53GS9 BNIP3P16-201ENST00000589779 534 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 AC019176.2-201ENST00000611579 315 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 AC107871.2-201ENST00000612894 502 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 AC092608.2-201ENST00000624427 218 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.09□□□□□ -1.75
USP39Q53GS9 NAA50-211ENST00000630058 177 ntTSL 5 BASIC4.09□□□□□ -1.75
USP39Q53GS9 U6.114-201ENST00000636407 96 ntBASIC4.09□□□□□ -1.75
USP39Q53GS9 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
USP39Q53GS9 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.09□□□□□ -1.76
USP39Q53GS9 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
USP39Q53GS9 AC011978.2-201ENST00000569835 2054 ntBASIC4.09□□□□□ -1.76
USP39Q53GS9 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.09□□□□□ -1.76
USP39Q53GS9 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
USP39Q53GS9 RNA5SP119-201ENST00000362715 117 ntBASIC4.08□□□□□ -1.76
USP39Q53GS9 Y_RNA.80-201ENST00000362996 102 ntBASIC4.08□□□□□ -1.76
USP39Q53GS9 RNU6-593P-201ENST00000364716 112 ntBASIC4.08□□□□□ -1.76
USP39Q53GS9 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
USP39Q53GS9 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
USP39Q53GS9 Y_RNA.404-201ENST00000383978 102 ntBASIC4.08□□□□□ -1.76
USP39Q53GS9 MIR30B-201ENST00000384850 88 ntBASIC4.08□□□□□ -1.76
USP39Q53GS9 MIR548I3-201ENST00000408378 149 ntBASIC4.08□□□□□ -1.76
USP39Q53GS9 MIR548I1-201ENST00000408810 149 ntBASIC4.08□□□□□ -1.76
USP39Q53GS9 RNU2-21P-201ENST00000410368 188 ntBASIC4.08□□□□□ -1.76
USP39Q53GS9 RNA5SP104-201ENST00000410989 118 ntBASIC4.08□□□□□ -1.76
USP39Q53GS9 AC069218.2-201ENST00000411665 344 ntBASIC4.08□□□□□ -1.76
USP39Q53GS9 AC080125.1-201ENST00000414888 684 ntBASIC4.08□□□□□ -1.76
USP39Q53GS9 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC4.08□□□□□ -1.76
USP39Q53GS9 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.08□□□□□ -1.76
USP39Q53GS9 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.08□□□□□ -1.76
USP39Q53GS9 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC4.08□□□□□ -1.76
USP39Q53GS9 AC015911.1-201ENST00000495111 156 ntBASIC4.08□□□□□ -1.76
USP39Q53GS9 AC025445.1-201ENST00000502728 300 ntBASIC4.08□□□□□ -1.76
USP39Q53GS9 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC4.08□□□□□ -1.76
USP39Q53GS9 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.08□□□□□ -1.76
USP39Q53GS9 AC026801.2-201ENST00000515352 425 ntBASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 129.4 ms