Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 DEFB131E-202ENST00000602581 683 ntBASIC2.88□□□□□ -1.95
PDLIM3Q53GG5 AC006557.5-201ENST00000603126 811 ntBASIC2.88□□□□□ -1.95
PDLIM3Q53GG5 AC010591.1-201ENST00000603941 649 ntBASIC2.88□□□□□ -1.95
PDLIM3Q53GG5 AC006077.1-201ENST00000604746 343 ntBASIC2.88□□□□□ -1.95
PDLIM3Q53GG5 AL162274.2-201ENST00000614406 332 ntBASIC2.88□□□□□ -1.95
PDLIM3Q53GG5 AC027309.3-201ENST00000623419 351 ntBASIC2.88□□□□□ -1.95
PDLIM3Q53GG5 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
PDLIM3Q53GG5 OR5H6-203ENST00000642105 978 ntBASIC2.88□□□□□ -1.95
PDLIM3Q53GG5 AC027514.1-201ENST00000588561 1603 ntBASIC2.88□□□□□ -1.95
PDLIM3Q53GG5 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
PDLIM3Q53GG5 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.88□□□□□ -1.95
PDLIM3Q53GG5 HSPE1P11-201ENST00000339579 310 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 MIR449A-201ENST00000362113 91 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 Y_RNA.22-201ENST00000362492 102 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 SNORA5B-201ENST00000363786 132 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 RNU6-512P-201ENST00000364438 103 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AP002088.1-201ENST00000382740 395 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 RNU6-946P-201ENST00000383878 107 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 Y_RNA.516-201ENST00000384541 124 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 MIR1261-201ENST00000408659 82 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AC092809.3-201ENST00000415453 231 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AL139413.1-201ENST00000421309 217 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AC005300.1-201ENST00000428401 373 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AC005019.1-201ENST00000436455 431 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 RPS15AP9-201ENST00000439856 381 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 RPL23AP58-201ENST00000440453 469 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 CBWD4P-201ENST00000445695 655 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AC132479.1-201ENST00000449160 144 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AC013267.1-201ENST00000458227 267 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 RPS26P21-201ENST00000475397 348 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AC108078.1-201ENST00000508073 725 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 RNU6-720P-201ENST00000516363 108 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 RNA5SP471-201ENST00000516971 106 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 RNU6-410P-201ENST00000517006 107 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AP000867.2-201ENST00000532468 320 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AC016957.1-201ENST00000534895 309 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AL670379.6-201ENST00000603753 252 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AL670379.11-201ENST00000604059 253 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AC008162.1-201ENST00000604718 254 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AL670379.1-201ENST00000604752 252 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AL670379.5-201ENST00000605253 252 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AL670379.12-201ENST00000605291 253 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AL670379.8-201ENST00000605353 252 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AL670379.7-201ENST00000605823 252 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AF250324.2-201ENST00000608299 610 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AC130324.3-201ENST00000614165 542 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AC136475.10-201ENST00000620253 385 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AP003355.3-201ENST00000623465 114 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AC090617.7-201ENST00000623952 126 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AC099654.12-201ENST00000639868 649 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AC099654.7-201ENST00000635788 2127 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 AL355596.1-201ENST00000565399 3996 ntBASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
PDLIM3Q53GG5 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 SDAD1P2-201ENST00000441308 2028 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 FAM35BP-202ENST00000497389 3337 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 Y_RNA.1-201ENST00000352915 104 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 MIR30E-201ENST00000362104 92 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 SNORA62.1-201ENST00000364287 154 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 MIR558-201ENST00000384920 94 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 AC017079.2-201ENST00000416102 485 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 MTATP6P16-201ENST00000434543 526 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 RPS20P5-201ENST00000434808 360 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 DDX3P2-201ENST00000446138 111 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 AL671855.1-201ENST00000446875 1203 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 IGKV1OR-3-201ENST00000446944 348 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 RPL37P6-201ENST00000460682 294 ntBASIC2.86□□□□□ -1.95
PDLIM3Q53GG5 S100A11P2-201ENST00000467589 312 ntBASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 125.7 ms