Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
CUX1P39880 AL139397.2-201ENST00000404529 772 ntBASIC1.27□□□□□ -2.21
CUX1P39880 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.27□□□□□ -2.21
CUX1P39880 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC1.27□□□□□ -2.21
CUX1P39880 RPL27AP8-201ENST00000424277 446 ntBASIC1.27□□□□□ -2.21
CUX1P39880 SDAD1P3-201ENST00000427380 333 ntBASIC1.27□□□□□ -2.21
CUX1P39880 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC1.27□□□□□ -2.21
CUX1P39880 USP12PX-201ENST00000432383 1057 ntBASIC1.27□□□□□ -2.21
CUX1P39880 AC016691.1-201ENST00000441321 413 ntBASIC1.27□□□□□ -2.21
CUX1P39880 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC1.27□□□□□ -2.21
CUX1P39880 RNU7-193P-201ENST00000516723 65 ntBASIC1.27□□□□□ -2.21
CUX1P39880 AC104997.1-201ENST00000519761 717 ntBASIC1.27□□□□□ -2.21
CUX1P39880 EIF4EP5-201ENST00000528228 640 ntBASIC1.27□□□□□ -2.21
CUX1P39880 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.27□□□□□ -2.21
CUX1P39880 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC1.27□□□□□ -2.21
CUX1P39880 CCT4P2-201ENST00000233836 1548 ntBASIC1.27□□□□□ -2.21
CUX1P39880 AL022578.1-201ENST00000439330 1433 ntBASIC1.26□□□□□ -2.21
CUX1P39880 RNU6-35P-201ENST00000384530 107 ntBASIC1.26□□□□□ -2.21
CUX1P39880 MIR508-201ENST00000384857 115 ntBASIC1.26□□□□□ -2.21
CUX1P39880 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC1.26□□□□□ -2.21
CUX1P39880 AL356320.2-201ENST00000417263 507 ntBASIC1.26□□□□□ -2.21
CUX1P39880 AC012497.1-201ENST00000429392 575 ntBASIC1.26□□□□□ -2.21
CUX1P39880 AC098934.3-201ENST00000430450 190 ntBASIC1.26□□□□□ -2.21
CUX1P39880 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC1.26□□□□□ -2.21
CUX1P39880 Z77249.1-201ENST00000444622 1175 ntBASIC1.26□□□□□ -2.21
CUX1P39880 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC1.26□□□□□ -2.21
CUX1P39880 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC1.26□□□□□ -2.21
CUX1P39880 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.26□□□□□ -2.21
CUX1P39880 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC1.26□□□□□ -2.21
CUX1P39880 AC023141.11-201ENST00000508864 202 ntBASIC1.26□□□□□ -2.21
CUX1P39880 AC004812.1-201ENST00000540773 146 ntBASIC1.26□□□□□ -2.21
CUX1P39880 AC074029.2-201ENST00000551045 634 ntBASIC1.26□□□□□ -2.21
CUX1P39880 AC078899.2-201ENST00000595282 212 ntBASIC1.26□□□□□ -2.21
CUX1P39880 AL031775.1-201ENST00000607014 887 ntBASIC1.26□□□□□ -2.21
CUX1P39880 AC106052.1-201ENST00000608029 497 ntBASIC1.26□□□□□ -2.21
CUX1P39880 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC1.26□□□□□ -2.21
CUX1P39880 AC010809.3-201ENST00000621310 641 ntBASIC1.26□□□□□ -2.21
CUX1P39880 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC1.26□□□□□ -2.21
CUX1P39880 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
CUX1P39880 SUCLA2P2-201ENST00000417269 1309 ntBASIC1.26□□□□□ -2.21
CUX1P39880 RNU6-697P-201ENST00000363348 107 ntBASIC1.25□□□□□ -2.21
CUX1P39880 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC1.25□□□□□ -2.21
CUX1P39880 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC1.25□□□□□ -2.21
CUX1P39880 AC107954.1-201ENST00000565906 727 ntBASIC1.25□□□□□ -2.21
CUX1P39880 AC133485.1-201ENST00000567176 124 ntBASIC1.25□□□□□ -2.21
CUX1P39880 AC138907.6-201ENST00000568401 126 ntBASIC1.25□□□□□ -2.21
CUX1P39880 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC1.25□□□□□ -2.21
CUX1P39880 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
CUX1P39880 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC1.25□□□□□ -2.21
CUX1P39880 AC008163.1-202ENST00000636004 2889 ntBASIC1.25□□□□□ -2.21
CUX1P39880 OR4G2P-201ENST00000328113 903 ntBASIC1.25□□□□□ -2.21
CUX1P39880 RNA5SP499-201ENST00000363982 119 ntBASIC1.25□□□□□ -2.21
CUX1P39880 RPL31P35-201ENST00000431058 377 ntBASIC1.25□□□□□ -2.21
CUX1P39880 RNF2P1-201ENST00000442955 1010 ntBASIC1.25□□□□□ -2.21
CUX1P39880 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC1.25□□□□□ -2.21
CUX1P39880 AC098862.1-201ENST00000504991 413 ntBASIC1.25□□□□□ -2.21
CUX1P39880 AC093770.1-201ENST00000511559 571 ntBASIC1.25□□□□□ -2.21
CUX1P39880 AC133963.2-201ENST00000513686 578 ntBASIC1.25□□□□□ -2.21
CUX1P39880 SNORA31.8-201ENST00000516327 108 ntBASIC1.25□□□□□ -2.21
CUX1P39880 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC1.25□□□□□ -2.21
CUX1P39880 HSPE1P7-201ENST00000604681 321 ntBASIC1.25□□□□□ -2.21
CUX1P39880 AC003001.2-201ENST00000616294 831 ntBASIC1.25□□□□□ -2.21
CUX1P39880 UCA1.1-201ENST00000620952 75 ntBASIC1.25□□□□□ -2.21
CUX1P39880 AC100821.1-201ENST00000523153 2479 ntBASIC1.24□□□□□ -2.21
CUX1P39880 AL133384.1-201ENST00000412744 351 ntBASIC1.24□□□□□ -2.21
CUX1P39880 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC1.24□□□□□ -2.21
CUX1P39880 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC1.24□□□□□ -2.21
CUX1P39880 snoU13.7-201ENST00000459220 104 ntBASIC1.24□□□□□ -2.21
CUX1P39880 AC005410.1-202ENST00000460347 485 ntBASIC1.24□□□□□ -2.21
CUX1P39880 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC1.24□□□□□ -2.21
CUX1P39880 NDUFB4P2-201ENST00000509515 391 ntBASIC1.24□□□□□ -2.21
CUX1P39880 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC1.24□□□□□ -2.21
CUX1P39880 AC005034.5-201ENST00000604219 466 ntBASIC1.24□□□□□ -2.21
CUX1P39880 AL009028.1-201ENST00000604895 802 ntBASIC1.24□□□□□ -2.21
CUX1P39880 AL355810.1-201ENST00000614629 552 ntBASIC1.24□□□□□ -2.21
CUX1P39880 AC109454.4-201ENST00000623411 649 ntBASIC1.24□□□□□ -2.21
CUX1P39880 USP9YP33-201ENST00000412220 421 ntBASIC1.23□□□□□ -2.21
CUX1P39880 USP9YP35-201ENST00000435696 412 ntBASIC1.23□□□□□ -2.21
CUX1P39880 AC055731.1-201ENST00000474387 401 ntBASIC1.23□□□□□ -2.21
CUX1P39880 AC107032.1-201ENST00000485945 480 ntBASIC1.23□□□□□ -2.21
CUX1P39880 AC104806.1-201ENST00000508720 308 ntBASIC1.23□□□□□ -2.21
CUX1P39880 RNU6-351P-201ENST00000516097 100 ntBASIC1.23□□□□□ -2.21
CUX1P39880 RNU11-2P-201ENST00000516898 142 ntBASIC1.23□□□□□ -2.21
CUX1P39880 SNORA48.11-201ENST00000517015 89 ntBASIC1.23□□□□□ -2.21
CUX1P39880 CYCSP23-201ENST00000519781 313 ntBASIC1.23□□□□□ -2.21
CUX1P39880 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC1.23□□□□□ -2.21
CUX1P39880 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC1.23□□□□□ -2.21
CUX1P39880 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC1.23□□□□□ -2.21
CUX1P39880 AL355812.1-201ENST00000603215 216 ntBASIC1.23□□□□□ -2.21
CUX1P39880 AC025594.3-201ENST00000613068 790 ntBASIC1.23□□□□□ -2.21
CUX1P39880 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
CUX1P39880 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
CUX1P39880 AL512604.1-201ENST00000404812 257 ntBASIC1.22□□□□□ -2.21
CUX1P39880 MORN2-203ENST00000409131 544 ntTSL 5 BASIC1.22□□□□□ -2.21
CUX1P39880 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC1.22□□□□□ -2.21
CUX1P39880 AC018437.1-201ENST00000492214 406 ntBASIC1.22□□□□□ -2.21
CUX1P39880 RPS27P26-201ENST00000494583 239 ntBASIC1.22□□□□□ -2.21
CUX1P39880 AC091965.2-201ENST00000512324 613 ntBASIC1.22□□□□□ -2.21
CUX1P39880 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC1.22□□□□□ -2.21
CUX1P39880 MTCYBP23-201ENST00000558717 1102 ntBASIC1.22□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms