Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXC11O43248 AC103987.3-201ENST00000582071 292 ntBASIC3.4□□□□□ -1.87
HOXC11O43248 MIR4325-201ENST00000583049 90 ntBASIC3.4□□□□□ -1.87
HOXC11O43248 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.4□□□□□ -1.87
HOXC11O43248 AL355598.1-201ENST00000604169 202 ntBASIC3.4□□□□□ -1.87
HOXC11O43248 AL162713.1-201ENST00000604480 262 ntBASIC3.4□□□□□ -1.87
HOXC11O43248 NDUFA8P1-201ENST00000605525 367 ntBASIC3.4□□□□□ -1.87
HOXC11O43248 HULC.1-201ENST00000612720 240 ntBASIC3.4□□□□□ -1.87
HOXC11O43248 AC025034.2-201ENST00000623264 286 ntBASIC3.4□□□□□ -1.87
HOXC11O43248 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXC11O43248 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXC11O43248 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXC11O43248 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXC11O43248 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.39□□□□□ -1.87
HOXC11O43248 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXC11O43248 AC017071.1-201ENST00000564407 2204 ntBASIC3.39□□□□□ -1.87
HOXC11O43248 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.39□□□□□ -1.87
HOXC11O43248 RNU1-105P-201ENST00000363470 161 ntBASIC3.39□□□□□ -1.87
HOXC11O43248 MIR128-1-201ENST00000384921 82 ntBASIC3.39□□□□□ -1.87
HOXC11O43248 SNORA48.5-201ENST00000391143 135 ntBASIC3.39□□□□□ -1.87
HOXC11O43248 RNA5SP354-201ENST00000391247 136 ntBASIC3.39□□□□□ -1.87
HOXC11O43248 GSTA9P-201ENST00000406231 611 ntBASIC3.39□□□□□ -1.87
HOXC11O43248 RNU6-387P-201ENST00000411331 105 ntBASIC3.39□□□□□ -1.87
HOXC11O43248 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HOXC11O43248 AC063979.1-201ENST00000415539 377 ntBASIC3.39□□□□□ -1.87
HOXC11O43248 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXC11O43248 DPPA3P1-201ENST00000448050 469 ntBASIC3.39□□□□□ -1.87
HOXC11O43248 AC132479.1-201ENST00000449160 144 ntBASIC3.39□□□□□ -1.87
HOXC11O43248 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXC11O43248 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXC11O43248 RPS27P29-201ENST00000463110 252 ntBASIC3.39□□□□□ -1.87
HOXC11O43248 RN7SL442P-201ENST00000473804 320 ntBASIC3.39□□□□□ -1.87
HOXC11O43248 AC079382.1-201ENST00000493346 557 ntBASIC3.39□□□□□ -1.87
HOXC11O43248 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXC11O43248 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.39□□□□□ -1.87
HOXC11O43248 AC114786.4-201ENST00000508771 728 ntBASIC3.39□□□□□ -1.87
HOXC11O43248 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXC11O43248 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXC11O43248 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC3.39□□□□□ -1.87
HOXC11O43248 MTND4LP5-201ENST00000605152 292 ntBASIC3.39□□□□□ -1.87
HOXC11O43248 AC064807.4-201ENST00000607201 407 ntBASIC3.39□□□□□ -1.87
HOXC11O43248 Z99129.1-201ENST00000612510 255 ntBASIC3.39□□□□□ -1.87
HOXC11O43248 AC012409.4-201ENST00000612923 249 ntBASIC3.39□□□□□ -1.87
HOXC11O43248 AC009161.2-201ENST00000624626 138 ntBASIC3.39□□□□□ -1.87
HOXC11O43248 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HOXC11O43248 MTND5P17-201ENST00000418405 1603 ntBASIC3.39□□□□□ -1.87
HOXC11O43248 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXC11O43248 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXC11O43248 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXC11O43248 AC091564.4-201ENST00000533934 2194 ntBASIC3.39□□□□□ -1.87
HOXC11O43248 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXC11O43248 AC058791.1-201ENST00000608412 3198 ntBASIC3.39□□□□□ -1.87
HOXC11O43248 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
HOXC11O43248 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXC11O43248 Y_RNA.318-201ENST00000365131 97 ntBASIC3.38□□□□□ -1.87
HOXC11O43248 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HOXC11O43248 AP002088.1-201ENST00000382740 395 ntBASIC3.38□□□□□ -1.87
HOXC11O43248 RNA5SP111-201ENST00000411386 101 ntBASIC3.38□□□□□ -1.87
HOXC11O43248 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXC11O43248 NDUFS5P4-201ENST00000412983 318 ntBASIC3.38□□□□□ -1.87
HOXC11O43248 USP9YP6-201ENST00000413550 854 ntBASIC3.38□□□□□ -1.87
HOXC11O43248 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXC11O43248 AL353678.1-201ENST00000422735 741 ntBASIC3.38□□□□□ -1.87
HOXC11O43248 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXC11O43248 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXC11O43248 AC073464.1-201ENST00000429823 534 ntBASIC3.38□□□□□ -1.87
HOXC11O43248 AL591704.1-201ENST00000432574 275 ntBASIC3.38□□□□□ -1.87
HOXC11O43248 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXC11O43248 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXC11O43248 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXC11O43248 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXC11O43248 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXC11O43248 MRPS17P3-201ENST00000465453 385 ntBASIC3.38□□□□□ -1.87
HOXC11O43248 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXC11O43248 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXC11O43248 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXC11O43248 MTCYBP20-201ENST00000524239 1129 ntBASIC3.38□□□□□ -1.87
HOXC11O43248 RANP3-201ENST00000530970 276 ntBASIC3.38□□□□□ -1.87
HOXC11O43248 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.38□□□□□ -1.87
HOXC11O43248 NACAP3-201ENST00000552100 481 ntBASIC3.38□□□□□ -1.87
HOXC11O43248 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXC11O43248 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXC11O43248 AC015917.1-201ENST00000579654 510 ntBASIC3.38□□□□□ -1.87
HOXC11O43248 MIR15A-201ENST00000607334 83 ntBASIC3.38□□□□□ -1.87
HOXC11O43248 AL157817.1-201ENST00000614264 790 ntBASIC3.38□□□□□ -1.87
HOXC11O43248 AC136475.10-201ENST00000620253 385 ntBASIC3.38□□□□□ -1.87
HOXC11O43248 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXC11O43248 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HOXC11O43248 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
HOXC11O43248 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
HOXC11O43248 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXC11O43248 MTND4P35-201ENST00000604257 1375 ntBASIC3.38□□□□□ -1.87
HOXC11O43248 AC092447.7-201ENST00000422212 1621 ntBASIC3.37□□□□□ -1.87
HOXC11O43248 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
HOXC11O43248 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXC11O43248 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.37□□□□□ -1.87
HOXC11O43248 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
HOXC11O43248 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXC11O43248 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC3.37□□□□□ -1.87
HOXC11O43248 Y_RNA.367-201ENST00000365544 101 ntBASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms