Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC090616.2-202ENST00000584248 222 ntBASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 AC008739.2-201ENST00000597006 317 ntBASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 AP001981.2-201ENST00000603241 418 ntBASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 DPPA3P3-201ENST00000603842 430 ntBASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 AL161729.4-201ENST00000604650 476 ntBASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 AC004223.4-201ENST00000612426 332 ntBASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 AC091304.6-201ENST00000619761 202 ntBASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 AC006927.3-201ENST00000638789 384 ntBASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.78□□□□□ -1.97
VPS54Q9P1Q0 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.97
VPS54Q9P1Q0 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 AC007336.1-201ENST00000576365 3828 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 MIR21-201ENST00000362134 72 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 RNU6-501P-201ENST00000364072 100 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 SNORA41-201ENST00000384675 132 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 Y_RNA.560-201ENST00000384689 102 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 UBE2V1P2-201ENST00000397758 440 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 BTF3L4P3-201ENST00000418879 476 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 USP9YP26-201ENST00000421008 661 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 AL365496.1-201ENST00000426885 215 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 RPS20P22-201ENST00000473700 357 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 RPS3AP22-201ENST00000488297 769 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 AC138853.1-201ENST00000503549 823 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 AC026436.1-201ENST00000510537 270 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 OR5BM1P-201ENST00000512021 366 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 MRPS33P3-201ENST00000513456 322 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 RNU6-759P-201ENST00000516740 103 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 RNU6-1003P-201ENST00000517099 105 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 MTND4LP18-201ENST00000526864 291 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 DEFB108A-201ENST00000530110 222 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 MGST1-215ENST00000540056 546 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 PCMTD1P2-201ENST00000565017 355 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 AC091489.2-201ENST00000566263 604 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 MIR4293-201ENST00000584305 78 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 AC108747.1-201ENST00000609508 535 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 AC004852.3-201ENST00000614131 326 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 AC093591.3-201ENST00000634516 308 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 PABPC1P9-201ENST00000426076 1612 ntBASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.77□□□□□ -1.97
VPS54Q9P1Q0 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 VTRNA1-1-201ENST00000363120 99 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 Y_RNA.111-201ENST00000363248 100 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 RNU5A-8P-201ENST00000364102 114 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 U8.8-201ENST00000365399 135 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 RNU6-217P-201ENST00000384164 104 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 RNU6-140P-201ENST00000384566 108 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 RNA5SP354-201ENST00000391247 136 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 RNU2-33P-201ENST00000410344 192 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 AC009414.1-201ENST00000427200 443 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 AC244035.1-201ENST00000430042 390 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 TIMM9P1-201ENST00000436122 256 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 AC118469.1-201ENST00000442943 488 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 EPS15P1-201ENST00000448836 336 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 RNU7-23P-201ENST00000459465 62 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 RPL23AP41-201ENST00000484754 458 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 RPS27P26-201ENST00000494583 239 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 RNU6-232P-201ENST00000517144 64 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 AC093012.1-202ENST00000549403 582 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 AC105129.3-201ENST00000605455 485 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 AC103810.6-201ENST00000606708 136 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 AC046143.2-201ENST00000609789 160 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 SNHG22-203ENST00000617833 660 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 AC009159.1-201ENST00000618386 642 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 AC068880.5-201ENST00000624331 290 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 MIR1291-201ENST00000627649 87 ntBASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.76□□□□□ -1.97
VPS54Q9P1Q0 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 RNA5SP289-201ENST00000362332 137 ntBASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 RNY4P24-201ENST00000362735 96 ntBASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 RNU5F-6P-201ENST00000362979 116 ntBASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 RNU1-51P-201ENST00000365345 176 ntBASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 AL359634.1-202ENST00000404721 284 ntBASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 RNU6-920P-201ENST00000410926 92 ntBASIC2.75□□□□□ -1.97
VPS54Q9P1Q0 MTND4P20-201ENST00000424125 869 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms