Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 HSPD1P15-201ENST00000505573 1122 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 RNU6-927P-201ENST00000516199 100 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 MTCYBP20-201ENST00000524239 1129 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC2.79□□□□□ -1.96
NKX3-1Q99801 AP003072.2-201ENST00000527756 676 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.79□□□□□ -1.96
NKX3-1Q99801 RPS3AP4-201ENST00000555161 764 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC2.79□□□□□ -1.96
NKX3-1Q99801 DEFB131E-202ENST00000602581 683 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 AL670379.6-201ENST00000603753 252 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 AL670379.11-201ENST00000604059 253 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 AC008162.1-201ENST00000604718 254 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 AL670379.1-201ENST00000604752 252 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 AL670379.5-201ENST00000605253 252 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 AL670379.12-201ENST00000605291 253 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 AL670379.8-201ENST00000605353 252 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 AL670379.7-201ENST00000605823 252 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 AC092954.2-201ENST00000609103 430 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 AC107294.3-201ENST00000609211 526 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 AC130324.3-201ENST00000614165 542 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 MIR7975-201ENST00000619350 68 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 AC068792.1-201ENST00000621354 417 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 AC027309.3-201ENST00000623419 351 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 FRG1KP-201ENST00000623592 341 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 AL359740.1-201ENST00000624340 592 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 AC009161.2-201ENST00000624626 138 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.79□□□□□ -1.96
NKX3-1Q99801 OR5H6-203ENST00000642105 978 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 MAPK10-322ENST00000641485 4530 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
NKX3-1Q99801 AL365361.1-201ENST00000566942 3481 ntBASIC2.78□□□□□ -1.96
NKX3-1Q99801 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
NKX3-1Q99801 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
NKX3-1Q99801 U3.6-201ENST00000363622 211 ntBASIC2.78□□□□□ -1.96
NKX3-1Q99801 RNU6-512P-201ENST00000364438 103 ntBASIC2.78□□□□□ -1.96
NKX3-1Q99801 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
NKX3-1Q99801 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
NKX3-1Q99801 Y_RNA.505-201ENST00000384489 102 ntBASIC2.78□□□□□ -1.96
NKX3-1Q99801 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
NKX3-1Q99801 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.78□□□□□ -1.96
NKX3-1Q99801 TRIAP1P1-201ENST00000427062 225 ntBASIC2.78□□□□□ -1.96
NKX3-1Q99801 RPL23AP83-201ENST00000434984 473 ntBASIC2.78□□□□□ -1.96
NKX3-1Q99801 MTND1P1-201ENST00000445453 368 ntBASIC2.78□□□□□ -1.96
NKX3-1Q99801 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.78□□□□□ -1.96
NKX3-1Q99801 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.78□□□□□ -1.96
NKX3-1Q99801 AC126389.1-201ENST00000477436 290 ntBASIC2.78□□□□□ -1.96
NKX3-1Q99801 HMGB1P29-201ENST00000505659 499 ntBASIC2.78□□□□□ -1.96
NKX3-1Q99801 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.78□□□□□ -1.96
NKX3-1Q99801 APOOP4-201ENST00000513530 597 ntBASIC2.78□□□□□ -1.96
NKX3-1Q99801 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC2.78□□□□□ -1.96
NKX3-1Q99801 RNA5SP217-201ENST00000515959 91 ntBASIC2.78□□□□□ -1.96
NKX3-1Q99801 RNU6-410P-201ENST00000517006 107 ntBASIC2.78□□□□□ -1.96
NKX3-1Q99801 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC2.78□□□□□ -1.96
NKX3-1Q99801 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC2.78□□□□□ -1.96
NKX3-1Q99801 AP001646.1-201ENST00000527936 915 ntBASIC2.78□□□□□ -1.96
NKX3-1Q99801 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC2.78□□□□□ -1.96
NKX3-1Q99801 MIR4276-201ENST00000584832 70 ntBASIC2.78□□□□□ -1.96
NKX3-1Q99801 HSPE1P7-201ENST00000604681 321 ntBASIC2.78□□□□□ -1.96
NKX3-1Q99801 AC008962.1-201ENST00000605729 304 ntBASIC2.78□□□□□ -1.96
NKX3-1Q99801 AC122108.2-201ENST00000611946 526 ntBASIC2.78□□□□□ -1.96
NKX3-1Q99801 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.78□□□□□ -1.96
NKX3-1Q99801 AL356321.1-201ENST00000621360 228 ntBASIC2.78□□□□□ -1.96
NKX3-1Q99801 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.78□□□□□ -1.96
NKX3-1Q99801 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.78□□□□□ -1.96
NKX3-1Q99801 MTND1P37-201ENST00000636562 264 ntBASIC2.78□□□□□ -1.96
NKX3-1Q99801 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.78□□□□□ -1.96
NKX3-1Q99801 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
NKX3-1Q99801 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.78□□□□□ -1.97
NKX3-1Q99801 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.97
NKX3-1Q99801 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC2.77□□□□□ -1.97
NKX3-1Q99801 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.77□□□□□ -1.97
NKX3-1Q99801 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
NKX3-1Q99801 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
NKX3-1Q99801 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
NKX3-1Q99801 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.77□□□□□ -1.97
NKX3-1Q99801 UBE2L2-201ENST00000254302 429 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 AC073343.1-201ENST00000328239 651 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
NKX3-1Q99801 RNU6-1097P-201ENST00000363586 107 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 Y_RNA.372-201ENST00000365599 102 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
NKX3-1Q99801 Y_RNA.554-201ENST00000384672 102 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 UBE2V1P2-201ENST00000397758 440 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 RN7SKP111-201ENST00000410349 271 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 AL031779.1-201ENST00000415663 330 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 MTATP6P18-201ENST00000417994 673 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 ZNF885P-201ENST00000420174 1098 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
NKX3-1Q99801 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC2.77□□□□□ -1.97
NKX3-1Q99801 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.77□□□□□ -1.97
NKX3-1Q99801 AC097713.2-201ENST00000430199 356 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 ATP5C1P1-201ENST00000441945 895 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC2.77□□□□□ -1.97
NKX3-1Q99801 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC2.77□□□□□ -1.97
NKX3-1Q99801 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC2.77□□□□□ -1.97
NKX3-1Q99801 RPL21P8-201ENST00000465083 535 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 RN7SL601P-201ENST00000471221 293 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC2.77□□□□□ -1.97
NKX3-1Q99801 AC116562.3-201ENST00000506136 177 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 RBBP4P6-201ENST00000508098 202 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms