Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ANKRD26P4-201ENST00000455755 950 ntBASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 Y_RNA.638-201ENST00000459374 113 ntBASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 AC090096.1-201ENST00000489168 390 ntBASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 RNU6-311P-201ENST00000516224 102 ntBASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 AL512310.1-201ENST00000548639 172 ntBASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 AC007151.1-201ENST00000572774 483 ntBASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 AC083760.1-201ENST00000589621 670 ntBASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 AL031281.1-201ENST00000604049 488 ntBASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 BCRP9-201ENST00000605312 388 ntBASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 AC079416.3-201ENST00000624479 549 ntBASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 ZNF876P-202ENST00000398732 1485 ntBASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 AL137003.2-201ENST00000606924 2538 ntBASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 RNU6-778P-201ENST00000363269 103 ntBASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 RNU6-512P-201ENST00000364438 103 ntBASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 TAS2R15P-201ENST00000390674 928 ntBASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 NDUFS5P1-201ENST00000405668 289 ntBASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 MTND1P32-201ENST00000433043 938 ntBASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 LARP1BP3-201ENST00000437229 869 ntBASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 RNU7-26P-201ENST00000458980 63 ntBASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 AC109329.2-201ENST00000519658 482 ntBASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 MIR4769-201ENST00000584126 77 ntBASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 AC105148.1-201ENST00000604961 409 ntBASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 AC069234.5-201ENST00000611056 416 ntBASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 DUSP12P1-201ENST00000612874 516 ntBASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 AC025034.2-201ENST00000623264 286 ntBASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 U2.21-201ENST00000637295 81 ntBASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.7□□□□□ -1.98
HDDC3Q8N4P3 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 AC010329.5-201ENST00000623497 2174 ntBASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 XGY1-201ENST00000381172 446 ntBASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 AL139039.1-201ENST00000401900 692 ntBASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 SEPT2P1-201ENST00000419651 180 ntBASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 AL022400.1-201ENST00000423946 935 ntBASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 AL353729.1-201ENST00000425044 720 ntBASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 TOMM20P4-201ENST00000427861 435 ntBASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 RPS29P6-201ENST00000438196 145 ntBASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 SDR42E1P3-201ENST00000438345 502 ntBASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 AC090525.1-201ENST00000479116 478 ntBASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 NDUFB4P2-201ENST00000509515 391 ntBASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 RNU5A-4P-201ENST00000516588 111 ntBASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 AP000873.5-201ENST00000533906 236 ntBASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 MIR4293-201ENST00000584305 78 ntBASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 AL139418.1-201ENST00000613613 177 ntBASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 AC011939.3-201ENST00000613686 466 ntBASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 MTND4P16-201ENST00000466108 1367 ntBASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 AC080128.1-201ENST00000474389 1917 ntBASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 AP006437.1-201ENST00000641440 3685 ntBASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.69□□□□□ -1.98
HDDC3Q8N4P3 AC006378.2-201ENST00000623178 2476 ntBASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 Y_RNA.18-201ENST00000362461 102 ntBASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 RNU6-658P-201ENST00000384606 106 ntBASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 MIR513B-201ENST00000385136 84 ntBASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 RN7SKP192-201ENST00000411291 327 ntBASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 RPL36AP6-201ENST00000435770 321 ntBASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 ZNF736P11Y-201ENST00000442535 1213 ntBASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 RPS3P1-201ENST00000456781 192 ntBASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 RN7SL499P-201ENST00000481141 276 ntBASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 GZMAP1-201ENST00000503054 631 ntBASIC2.68□□□□□ -1.98
HDDC3Q8N4P3 RPF2P2-201ENST00000504693 896 ntBASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms