Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 RNU1-115P-201ENST00000365329 160 ntBASIC3.81□□□□□ -1.8
VRK3Q8IV63 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
VRK3Q8IV63 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VRK3Q8IV63 Y_RNA.404-201ENST00000383978 102 ntBASIC3.81□□□□□ -1.8
VRK3Q8IV63 RNU6-432P-201ENST00000384196 109 ntBASIC3.81□□□□□ -1.8
VRK3Q8IV63 Y_RNA.645-201ENST00000391229 102 ntBASIC3.81□□□□□ -1.8
VRK3Q8IV63 AL109755.1-201ENST00000401791 649 ntBASIC3.81□□□□□ -1.8
VRK3Q8IV63 AL583834.1-201ENST00000406943 343 ntBASIC3.81□□□□□ -1.8
VRK3Q8IV63 RNU6-1050P-201ENST00000410388 107 ntBASIC3.81□□□□□ -1.8
VRK3Q8IV63 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.81□□□□□ -1.8
VRK3Q8IV63 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.81□□□□□ -1.8
VRK3Q8IV63 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.81□□□□□ -1.8
VRK3Q8IV63 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
VRK3Q8IV63 AC087650.1-201ENST00000431445 468 ntBASIC3.81□□□□□ -1.8
VRK3Q8IV63 EIF4A1P11-201ENST00000451239 222 ntBASIC3.81□□□□□ -1.8
VRK3Q8IV63 HMGB3P21-201ENST00000452483 547 ntBASIC3.81□□□□□ -1.8
VRK3Q8IV63 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.81□□□□□ -1.8
VRK3Q8IV63 RNU6-470P-201ENST00000515954 104 ntBASIC3.81□□□□□ -1.8
VRK3Q8IV63 SNORA14.1-201ENST00000516113 141 ntBASIC3.81□□□□□ -1.8
VRK3Q8IV63 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.81□□□□□ -1.8
VRK3Q8IV63 Y_RNA.708-201ENST00000516950 96 ntBASIC3.81□□□□□ -1.8
VRK3Q8IV63 AC009812.2-201ENST00000517657 457 ntBASIC3.81□□□□□ -1.8
VRK3Q8IV63 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
VRK3Q8IV63 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.81□□□□□ -1.8
VRK3Q8IV63 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC3.81□□□□□ -1.8
VRK3Q8IV63 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC3.81□□□□□ -1.8
VRK3Q8IV63 MIR3941-201ENST00000582572 103 ntBASIC3.81□□□□□ -1.8
VRK3Q8IV63 AC009229.3-201ENST00000608056 282 ntBASIC3.81□□□□□ -1.8
VRK3Q8IV63 AC009570.1-201ENST00000609599 745 ntBASIC3.81□□□□□ -1.8
VRK3Q8IV63 AC011890.2-201ENST00000613393 294 ntBASIC3.81□□□□□ -1.8
VRK3Q8IV63 DLEU2_5.1-201ENST00000615567 84 ntBASIC3.81□□□□□ -1.8
VRK3Q8IV63 AC092608.2-201ENST00000624427 218 ntBASIC3.81□□□□□ -1.8
VRK3Q8IV63 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VRK3Q8IV63 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
VRK3Q8IV63 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.81□□□□□ -1.8
VRK3Q8IV63 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
VRK3Q8IV63 AC007390.2-201ENST00000606229 3803 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.8□□□□□ -1.8
VRK3Q8IV63 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VRK3Q8IV63 SNORA63.7-201ENST00000365579 123 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VRK3Q8IV63 DEFB109C-201ENST00000382575 264 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 DEFB109B-201ENST00000382656 264 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 RNU6-128P-201ENST00000383976 107 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 SNORA16.2-201ENST00000390991 127 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 RNU6-628P-201ENST00000410675 107 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.8□□□□□ -1.8
VRK3Q8IV63 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.8□□□□□ -1.8
VRK3Q8IV63 AC008267.5-201ENST00000424928 265 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.8□□□□□ -1.8
VRK3Q8IV63 AC093106.2-201ENST00000428212 385 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 RPL23AP69-201ENST00000431134 458 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.8□□□□□ -1.8
VRK3Q8IV63 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.8□□□□□ -1.8
VRK3Q8IV63 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.8□□□□□ -1.8
VRK3Q8IV63 GAPDHP27-201ENST00000447427 1020 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 NDUFS5P3-201ENST00000450668 321 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 snoU109.4-201ENST00000458953 143 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 RNU7-167P-201ENST00000459160 62 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 VN1R105P-201ENST00000486595 910 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 RPS26P15-201ENST00000488067 348 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 AP002812.1-201ENST00000495378 474 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 AC116655.1-201ENST00000508324 901 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 MTCO3P44-201ENST00000510977 541 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 Y_RNA.668-201ENST00000516233 93 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 RNU4ATAC7P-201ENST00000516280 125 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.8□□□□□ -1.8
VRK3Q8IV63 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.8□□□□□ -1.8
VRK3Q8IV63 RANP3-201ENST00000530970 276 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.8□□□□□ -1.8
VRK3Q8IV63 AC018462.2-201ENST00000605375 395 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 AC006157.1-201ENST00000611750 366 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.8□□□□□ -1.8
VRK3Q8IV63 FP236240.3-201ENST00000623061 327 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.8□□□□□ -1.8
VRK3Q8IV63 MIR6715B-201ENST00000637172 77 ntBASIC3.8□□□□□ -1.8
VRK3Q8IV63 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.8□□□□□ -1.8
VRK3Q8IV63 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
VRK3Q8IV63 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VRK3Q8IV63 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VRK3Q8IV63 IPO8P1-201ENST00000455509 3109 ntBASIC3.79□□□□□ -1.8
VRK3Q8IV63 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
VRK3Q8IV63 GABPAP-201ENST00000419271 1356 ntBASIC3.79□□□□□ -1.8
VRK3Q8IV63 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC3.79□□□□□ -1.8
VRK3Q8IV63 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.79□□□□□ -1.8
VRK3Q8IV63 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
VRK3Q8IV63 RNU6-490P-201ENST00000362985 107 ntBASIC3.79□□□□□ -1.8
VRK3Q8IV63 RN7SKP227-201ENST00000364445 330 ntBASIC3.79□□□□□ -1.8
VRK3Q8IV63 RNU6-637P-201ENST00000384050 107 ntBASIC3.79□□□□□ -1.8
VRK3Q8IV63 RNU6-1026P-201ENST00000384465 108 ntBASIC3.79□□□□□ -1.8
VRK3Q8IV63 SNORD70.1-201ENST00000391007 85 ntBASIC3.79□□□□□ -1.8
VRK3Q8IV63 AC080125.1-201ENST00000414888 684 ntBASIC3.79□□□□□ -1.8
VRK3Q8IV63 RPLP0P7-201ENST00000416050 667 ntBASIC3.79□□□□□ -1.8
VRK3Q8IV63 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.79□□□□□ -1.8
VRK3Q8IV63 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.79□□□□□ -1.8
VRK3Q8IV63 RPL12P46-201ENST00000436610 195 ntBASIC3.79□□□□□ -1.8
VRK3Q8IV63 HIGD1AP11-201ENST00000438361 280 ntBASIC3.79□□□□□ -1.8
VRK3Q8IV63 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.79□□□□□ -1.8
VRK3Q8IV63 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.79□□□□□ -1.8
VRK3Q8IV63 AC239809.1-201ENST00000450470 217 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms