Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC1.5□□□□□ -2.17
USP54Q70EL1 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC1.5□□□□□ -2.17
USP54Q70EL1 EEF1B2P4-201ENST00000551398 348 ntBASIC1.5□□□□□ -2.17
USP54Q70EL1 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC1.5□□□□□ -2.17
USP54Q70EL1 MIR3921-201ENST00000577308 85 ntBASIC1.5□□□□□ -2.17
USP54Q70EL1 MIR5000-201ENST00000577717 103 ntBASIC1.5□□□□□ -2.17
USP54Q70EL1 AC012669.1-201ENST00000603209 283 ntBASIC1.5□□□□□ -2.17
USP54Q70EL1 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC1.5□□□□□ -2.17
USP54Q70EL1 AC010738.1-201ENST00000604970 987 ntBASIC1.5□□□□□ -2.17
USP54Q70EL1 AP005137.2-201ENST00000609238 400 ntBASIC1.5□□□□□ -2.17
USP54Q70EL1 HMGB1P24-202ENST00000615653 685 ntBASIC1.5□□□□□ -2.17
USP54Q70EL1 AC011330.2-201ENST00000621680 635 ntBASIC1.5□□□□□ -2.17
USP54Q70EL1 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC1.5□□□□□ -2.17
USP54Q70EL1 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC1.5□□□□□ -2.17
USP54Q70EL1 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC1.5□□□□□ -2.17
USP54Q70EL1 SDAD1P2-201ENST00000441308 2028 ntBASIC1.5□□□□□ -2.17
USP54Q70EL1 SNORA18.2-201ENST00000383865 132 ntBASIC1.49□□□□□ -2.17
USP54Q70EL1 RNU6-920P-201ENST00000410926 92 ntBASIC1.49□□□□□ -2.17
USP54Q70EL1 AC012497.1-201ENST00000429392 575 ntBASIC1.49□□□□□ -2.17
USP54Q70EL1 ARF4P4-201ENST00000439608 520 ntBASIC1.49□□□□□ -2.17
USP54Q70EL1 PNPLA4P1-201ENST00000458328 305 ntBASIC1.49□□□□□ -2.17
USP54Q70EL1 RNA5SP233-201ENST00000459153 113 ntBASIC1.49□□□□□ -2.17
USP54Q70EL1 AC087588.1-201ENST00000462203 316 ntBASIC1.49□□□□□ -2.17
USP54Q70EL1 RNA5SP436-201ENST00000516020 115 ntBASIC1.49□□□□□ -2.17
USP54Q70EL1 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC1.49□□□□□ -2.17
USP54Q70EL1 MTCYBP27-201ENST00000555160 670 ntBASIC1.49□□□□□ -2.17
USP54Q70EL1 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
USP54Q70EL1 AC025594.3-201ENST00000613068 790 ntBASIC1.49□□□□□ -2.17
USP54Q70EL1 AC107905.1-201ENST00000616204 426 ntBASIC1.49□□□□□ -2.17
USP54Q70EL1 MIR7515-201ENST00000637837 67 ntBASIC1.49□□□□□ -2.17
USP54Q70EL1 AC111188.2-201ENST00000529697 1387 ntBASIC1.49□□□□□ -2.17
USP54Q70EL1 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
USP54Q70EL1 SNORD56-201ENST00000413522 71 ntBASIC1.48□□□□□ -2.17
USP54Q70EL1 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.48□□□□□ -2.17
USP54Q70EL1 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
USP54Q70EL1 RAB11AP1-201ENST00000442978 646 ntBASIC1.48□□□□□ -2.17
USP54Q70EL1 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.48□□□□□ -2.17
USP54Q70EL1 ANKRD26P4-201ENST00000455755 950 ntBASIC1.48□□□□□ -2.17
USP54Q70EL1 VPS26AP1-201ENST00000483197 979 ntBASIC1.48□□□□□ -2.17
USP54Q70EL1 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC1.48□□□□□ -2.17
USP54Q70EL1 AC093770.1-201ENST00000511559 571 ntBASIC1.48□□□□□ -2.17
USP54Q70EL1 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC1.48□□□□□ -2.17
USP54Q70EL1 AC024619.4-201ENST00000580924 316 ntBASIC1.48□□□□□ -2.17
USP54Q70EL1 AC021755.4-201ENST00000616620 456 ntBASIC1.48□□□□□ -2.17
USP54Q70EL1 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC1.48□□□□□ -2.17
USP54Q70EL1 AL137003.2-201ENST00000606924 2538 ntBASIC1.48□□□□□ -2.17
USP54Q70EL1 RNU4-38P-201ENST00000364472 129 ntBASIC1.48□□□□□ -2.17
USP54Q70EL1 MIR513A1-201ENST00000385138 129 ntBASIC1.48□□□□□ -2.17
USP54Q70EL1 AL356379.1-201ENST00000414105 126 ntBASIC1.48□□□□□ -2.17
USP54Q70EL1 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC1.48□□□□□ -2.17
USP54Q70EL1 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC1.48□□□□□ -2.17
USP54Q70EL1 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC1.48□□□□□ -2.17
USP54Q70EL1 RFC5P1-201ENST00000454419 874 ntBASIC1.48□□□□□ -2.17
USP54Q70EL1 HMGB1P14-201ENST00000557424 591 ntBASIC1.48□□□□□ -2.17
USP54Q70EL1 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC1.48□□□□□ -2.17
USP54Q70EL1 AC012443.1-201ENST00000605605 231 ntBASIC1.48□□□□□ -2.17
USP54Q70EL1 AC083865.1-201ENST00000636634 831 ntBASIC1.48□□□□□ -2.17
USP54Q70EL1 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
USP54Q70EL1 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.48□□□□□ -2.17
USP54Q70EL1 AC009902.3-201ENST00000606235 2172 ntBASIC1.47□□□□□ -2.17
USP54Q70EL1 SLC10A5P1-201ENST00000379063 1306 ntBASIC1.47□□□□□ -2.17
USP54Q70EL1 MIR17-201ENST00000385012 84 ntBASIC1.47□□□□□ -2.17
USP54Q70EL1 AL133384.1-201ENST00000412744 351 ntBASIC1.47□□□□□ -2.17
USP54Q70EL1 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC1.47□□□□□ -2.17
USP54Q70EL1 AC098614.2-201ENST00000426040 255 ntBASIC1.47□□□□□ -2.17
USP54Q70EL1 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC1.47□□□□□ -2.17
USP54Q70EL1 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC1.47□□□□□ -2.17
USP54Q70EL1 AC108059.3-201ENST00000456388 214 ntBASIC1.47□□□□□ -2.17
USP54Q70EL1 MTND4LP3-201ENST00000468320 276 ntBASIC1.47□□□□□ -2.17
USP54Q70EL1 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.47□□□□□ -2.17
USP54Q70EL1 MRPS36P2-201ENST00000512569 299 ntBASIC1.47□□□□□ -2.17
USP54Q70EL1 RNU6-27P-201ENST00000516146 107 ntBASIC1.47□□□□□ -2.17
USP54Q70EL1 RNU6-113P-201ENST00000516653 101 ntBASIC1.47□□□□□ -2.17
USP54Q70EL1 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.47□□□□□ -2.17
USP54Q70EL1 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC1.47□□□□□ -2.17
USP54Q70EL1 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC1.47□□□□□ -2.17
USP54Q70EL1 AC107214.2-201ENST00000608204 634 ntBASIC1.47□□□□□ -2.17
USP54Q70EL1 AC108706.1-201ENST00000611053 297 ntBASIC1.47□□□□□ -2.17
USP54Q70EL1 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC1.47□□□□□ -2.17
USP54Q70EL1 IL33-202ENST00000417746 2327 ntTSL 2 BASIC1.47□□□□□ -2.17
USP54Q70EL1 DDX10P1-201ENST00000448545 1933 ntBASIC1.46□□□□□ -2.18
USP54Q70EL1 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
USP54Q70EL1 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC1.46□□□□□ -2.18
USP54Q70EL1 MIR649-201ENST00000384843 97 ntBASIC1.46□□□□□ -2.18
USP54Q70EL1 TXNP7-201ENST00000406296 293 ntBASIC1.46□□□□□ -2.18
USP54Q70EL1 AL513475.1-201ENST00000406602 315 ntBASIC1.46□□□□□ -2.18
USP54Q70EL1 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.46□□□□□ -2.18
USP54Q70EL1 AP005597.4-201ENST00000526762 229 ntBASIC1.46□□□□□ -2.18
USP54Q70EL1 NDUFS5P6-201ENST00000529136 295 ntBASIC1.46□□□□□ -2.18
USP54Q70EL1 AC004217.3-201ENST00000551552 878 ntBASIC1.46□□□□□ -2.18
USP54Q70EL1 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.46□□□□□ -2.18
USP54Q70EL1 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC1.46□□□□□ -2.18
USP54Q70EL1 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC1.46□□□□□ -2.18
USP54Q70EL1 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC1.45□□□□□ -2.18
USP54Q70EL1 USP12PX-201ENST00000432383 1057 ntBASIC1.45□□□□□ -2.18
USP54Q70EL1 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC1.45□□□□□ -2.18
USP54Q70EL1 MTND1P33-201ENST00000446251 917 ntBASIC1.45□□□□□ -2.18
USP54Q70EL1 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC1.45□□□□□ -2.18
USP54Q70EL1 AC022447.3-201ENST00000506865 495 ntBASIC1.45□□□□□ -2.18
USP54Q70EL1 HIGD1AP6-201ENST00000521833 279 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms