Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AC025627.2-201ENST00000576220 160 ntBASIC3.41□□□□□ -1.86
HOXA4Q00056 AC006270.2-201ENST00000578523 652 ntBASIC3.41□□□□□ -1.86
HOXA4Q00056 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXA4Q00056 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXA4Q00056 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXA4Q00056 uc_338.22-201ENST00000622722 187 ntBASIC3.41□□□□□ -1.86
HOXA4Q00056 Z99571.1-201ENST00000636677 394 ntBASIC3.41□□□□□ -1.86
HOXA4Q00056 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXA4Q00056 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
HOXA4Q00056 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXA4Q00056 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
HOXA4Q00056 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.86
HOXA4Q00056 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.86
HOXA4Q00056 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
HOXA4Q00056 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
HOXA4Q00056 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
HOXA4Q00056 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
HOXA4Q00056 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXA4Q00056 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXA4Q00056 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC3.4□□□□□ -1.87
HOXA4Q00056 DEFB108F-201ENST00000344638 222 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 RNA5SP513-201ENST00000364648 118 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.4□□□□□ -1.87
HOXA4Q00056 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXA4Q00056 SNORA22B-201ENST00000383876 138 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 RNU6-128P-201ENST00000383976 107 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 RNU6-95P-201ENST00000384697 107 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 AL391417.1-201ENST00000404100 426 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.4□□□□□ -1.87
HOXA4Q00056 RNU6-954P-201ENST00000411355 107 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 PMCHL1-202ENST00000423102 261 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 HSPD1P21-201ENST00000436541 245 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 HIGD1AP11-201ENST00000438361 280 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 TXNP1-201ENST00000441872 371 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 AL162151.2-201ENST00000448875 158 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 RPL23AP31-201ENST00000456160 467 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 AC087588.1-201ENST00000462203 316 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 RN7SL585P-201ENST00000470538 280 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 AC006499.6-201ENST00000511169 607 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 AF186190.1-201ENST00000517470 480 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXA4Q00056 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.4□□□□□ -1.87
HOXA4Q00056 AC025423.5-201ENST00000550230 219 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 MIR5692A1-201ENST00000580523 69 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXA4Q00056 AC006504.6-201ENST00000590142 199 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 AC002545.1-201ENST00000592511 181 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.4□□□□□ -1.87
HOXA4Q00056 AP001836.1-201ENST00000604675 523 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 AC019193.3-201ENST00000609144 554 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 AL355810.1-201ENST00000614629 552 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 ATP5A1P2-202ENST00000616464 443 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 AC010378.1-201ENST00000619270 362 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 AC098657.3-201ENST00000620434 263 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 AL360181.4-201ENST00000621752 134 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 AC067931.1-201ENST00000624190 671 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 AC008785.1-201ENST00000624475 456 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 AL773545.4-201ENST00000637262 310 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 MIR492-201ENST00000638676 116 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 AL513478.4-201ENST00000641636 310 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXA4Q00056 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXA4Q00056 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HOXA4Q00056 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HOXA4Q00056 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXA4Q00056 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.4□□□□□ -1.87
HOXA4Q00056 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXA4Q00056 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.87
HOXA4Q00056 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HOXA4Q00056 SDAD1P2-201ENST00000441308 2028 ntBASIC3.39□□□□□ -1.87
HOXA4Q00056 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.39□□□□□ -1.87
HOXA4Q00056 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXA4Q00056 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC3.39□□□□□ -1.87
HOXA4Q00056 AC011266.1-201ENST00000624119 3569 ntBASIC3.39□□□□□ -1.87
HOXA4Q00056 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.39□□□□□ -1.87
HOXA4Q00056 MTND5P19-201ENST00000424872 1794 ntBASIC3.39□□□□□ -1.87
HOXA4Q00056 RNU6-1167P-201ENST00000363227 94 ntBASIC3.39□□□□□ -1.87
HOXA4Q00056 RNA5SP399-201ENST00000364003 117 ntBASIC3.39□□□□□ -1.87
HOXA4Q00056 RNU6-266P-201ENST00000364225 107 ntBASIC3.39□□□□□ -1.87
HOXA4Q00056 SNORA33.2-201ENST00000365413 134 ntBASIC3.39□□□□□ -1.87
HOXA4Q00056 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXA4Q00056 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HOXA4Q00056 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.39□□□□□ -1.87
HOXA4Q00056 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.39□□□□□ -1.87
HOXA4Q00056 RPS24P13-201ENST00000442520 397 ntBASIC3.39□□□□□ -1.87
HOXA4Q00056 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXA4Q00056 RPL5P30-201ENST00000465511 891 ntBASIC3.39□□□□□ -1.87
HOXA4Q00056 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC3.39□□□□□ -1.87
HOXA4Q00056 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXA4Q00056 RPL29P14-201ENST00000495837 428 ntBASIC3.39□□□□□ -1.87
HOXA4Q00056 AC092436.3-201ENST00000511788 257 ntBASIC3.39□□□□□ -1.87
HOXA4Q00056 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.39□□□□□ -1.87
HOXA4Q00056 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXA4Q00056 RN7SKP21-201ENST00000516503 220 ntBASIC3.39□□□□□ -1.87
HOXA4Q00056 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.39□□□□□ -1.87
HOXA4Q00056 AC087854.1-201ENST00000519706 414 ntBASIC3.39□□□□□ -1.87
HOXA4Q00056 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.39□□□□□ -1.87
HOXA4Q00056 AC026371.1-201ENST00000551867 419 ntBASIC3.39□□□□□ -1.87
HOXA4Q00056 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 8.1 ms