Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 TTC39CP1-201ENST00000512513 755 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXA1P49639 RNU4ATAC8P-201ENST00000516196 109 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 RN7SKP258-201ENST00000517151 304 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 RANP9-201ENST00000519957 271 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 AC118273.2-201ENST00000532092 465 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXA1P49639 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC2.97□□□□□ -1.93
HOXA1P49639 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXA1P49639 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC2.97□□□□□ -1.93
HOXA1P49639 AC136624.4-201ENST00000573044 370 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 SNORA62.6-201ENST00000606322 83 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXA1P49639 DISC2.1-201ENST00000612827 205 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 AC012409.4-201ENST00000612923 249 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXA1P49639 AC022306.2-201ENST00000617563 647 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 AC092794.2-201ENST00000620933 563 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXA1P49639 AC079684.1-201ENST00000621405 437 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
HOXA1P49639 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.96□□□□□ -1.94
HOXA1P49639 AC007823.1-201ENST00000569932 1566 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.96□□□□□ -1.94
HOXA1P49639 AC103988.1-201ENST00000566382 2177 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 Y_RNA.70-201ENST00000362886 110 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 RNU6-1287P-201ENST00000362914 107 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 RNU6-1060P-201ENST00000384664 107 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 MIR141-201ENST00000384975 95 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 RNU6-550P-201ENST00000391057 101 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 RNU6-332P-201ENST00000391193 108 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 SNORA11B-201ENST00000408175 129 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 Y_RNA.615-201ENST00000410769 117 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 RN7SKP58-201ENST00000411010 305 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC2.96□□□□□ -1.94
HOXA1P49639 BMS1P22-201ENST00000414726 313 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 RPL7P10-201ENST00000417407 739 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXA1P49639 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXA1P49639 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.96□□□□□ -1.94
HOXA1P49639 C4BPAP2-201ENST00000428434 478 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC2.96□□□□□ -1.94
HOXA1P49639 NDUFB1P1-201ENST00000435191 180 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC2.96□□□□□ -1.94
HOXA1P49639 MTND4P25-201ENST00000441039 533 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 MTND3P16-201ENST00000452205 344 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXA1P49639 RN7SL385P-201ENST00000468873 276 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 RPL7P19-201ENST00000469948 618 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 AC008628.2-201ENST00000502605 298 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 MTCO2P30-201ENST00000503662 364 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 AC117522.3-201ENST00000507974 584 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXA1P49639 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXA1P49639 AC105417.1-201ENST00000514691 285 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 SNORA20.3-201ENST00000516880 132 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.96□□□□□ -1.94
HOXA1P49639 AF235103.2-201ENST00000525753 346 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.96□□□□□ -1.94
HOXA1P49639 AL118558.2-201ENST00000556294 238 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 AL138976.2-201ENST00000563989 694 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 AL627309.6-201ENST00000606857 840 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 AC006023.2-201ENST00000609916 167 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 MIR6748-201ENST00000610433 71 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 DUSP12P1-201ENST00000612874 516 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 AC090132.2-201ENST00000615881 347 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC2.96□□□□□ -1.94
HOXA1P49639 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXA1P49639 AL732372.2-225ENST00000642124 456 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC2.96□□□□□ -1.94
HOXA1P49639 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC2.96□□□□□ -1.94
HOXA1P49639 OR4G1P-203ENST00000641984 1631 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.94
HOXA1P49639 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.96□□□□□ -1.94
HOXA1P49639 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
HOXA1P49639 MTND5P19-201ENST00000424872 1794 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
HOXA1P49639 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.95□□□□□ -1.94
HOXA1P49639 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
HOXA1P49639 DEFB108F-201ENST00000344638 222 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 SNORA56-201ENST00000383966 129 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 RNU6-190P-201ENST00000384154 102 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 MIR493-201ENST00000385254 89 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 AL606923.1-201ENST00000406616 190 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 RNU6-1148P-201ENST00000410992 104 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 AL356095.1-201ENST00000417217 199 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 YPEL5P1-201ENST00000419731 367 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 SNRPEP10-201ENST00000420249 274 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 OR4C10P-201ENST00000434991 931 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 AL121601.2-201ENST00000438019 707 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 HSFY6P-201ENST00000445573 403 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXA1P49639 AC009220.1-201ENST00000451614 275 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.95□□□□□ -1.94
HOXA1P49639 RPL21P104-201ENST00000464143 478 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 RN7SL499P-201ENST00000481141 276 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXA1P49639 RPL39P36-201ENST00000490784 156 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 CCDC34P1-201ENST00000507441 517 ntBASIC2.95□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 169.1 ms