Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AC091489.2-201ENST00000566263 604 ntBASIC2.74□□□□□ -1.97
TNFRSF4P43489 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.74□□□□□ -1.97
TNFRSF4P43489 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.74□□□□□ -1.97
TNFRSF4P43489 MIR4293-201ENST00000584305 78 ntBASIC2.74□□□□□ -1.97
TNFRSF4P43489 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.74□□□□□ -1.97
TNFRSF4P43489 KC877982.1-201ENST00000602313 470 ntBASIC2.74□□□□□ -1.97
TNFRSF4P43489 FTX_3.1-201ENST00000610451 147 ntBASIC2.74□□□□□ -1.97
TNFRSF4P43489 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC2.74□□□□□ -1.97
TNFRSF4P43489 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.74□□□□□ -1.97
TNFRSF4P43489 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC2.74□□□□□ -1.97
TNFRSF4P43489 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.74□□□□□ -1.97
TNFRSF4P43489 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
TNFRSF4P43489 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
TNFRSF4P43489 RNU6-1284P-201ENST00000363701 100 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 Y_RNA.245-201ENST00000364493 95 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 SNORD116-1-201ENST00000384335 95 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 MIR767-201ENST00000390228 109 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
TNFRSF4P43489 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
TNFRSF4P43489 ELOCP17-201ENST00000414751 326 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.73□□□□□ -1.97
TNFRSF4P43489 AC112220.1-201ENST00000434628 355 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 KATNBL1P3-201ENST00000443475 909 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 MTATP6P30-201ENST00000443540 664 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 COX6CP12-201ENST00000446748 202 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 AC009961.3-201ENST00000449832 765 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 RPL31P3-201ENST00000458430 332 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 AC091179.1-201ENST00000461606 579 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 RPL23AP14-201ENST00000468281 468 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 AC003982.1-202ENST00000469928 248 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC2.73□□□□□ -1.97
TNFRSF4P43489 AC090525.1-201ENST00000479116 478 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 ARL4AP2-201ENST00000507378 601 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 AC117532.1-201ENST00000514638 323 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC2.73□□□□□ -1.97
TNFRSF4P43489 RNA5SP148-201ENST00000516527 94 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 RNU6-201P-201ENST00000517100 61 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.73□□□□□ -1.97
TNFRSF4P43489 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.73□□□□□ -1.97
TNFRSF4P43489 AC234778.2-201ENST00000566241 354 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC2.73□□□□□ -1.97
TNFRSF4P43489 MIR3605-201ENST00000583214 100 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 PIGPP4-201ENST00000584447 307 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
TNFRSF4P43489 DUXAP4-201ENST00000603046 613 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 AP001981.2-201ENST00000603241 418 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 DPPA3P3-201ENST00000603842 430 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 AL020991.1-201ENST00000612314 373 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 AC027807.2-201ENST00000616099 408 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 AC009159.1-201ENST00000618386 642 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 Z69908.1-201ENST00000622603 247 ntBASIC2.73□□□□□ -1.97
TNFRSF4P43489 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.73□□□□□ -1.97
TNFRSF4P43489 API5P2-201ENST00000397055 1498 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.72□□□□□ -1.97
TNFRSF4P43489 MIR148B-201ENST00000362252 99 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 AL356057.3-201ENST00000402607 340 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 RNU2-62P-201ENST00000410868 191 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.72□□□□□ -1.97
TNFRSF4P43489 USP9YP13-201ENST00000417797 480 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 HMGN2P30-201ENST00000423237 256 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC2.72□□□□□ -1.97
TNFRSF4P43489 AL353777.1-201ENST00000425552 326 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 AL365496.1-201ENST00000426885 215 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC2.72□□□□□ -1.97
TNFRSF4P43489 FCF1P1-201ENST00000432690 571 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 AC098826.1-201ENST00000433943 471 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.72□□□□□ -1.97
TNFRSF4P43489 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC2.72□□□□□ -1.97
TNFRSF4P43489 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC2.72□□□□□ -1.97
TNFRSF4P43489 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC2.72□□□□□ -1.97
TNFRSF4P43489 SNRPGP9-201ENST00000456025 225 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 AC087588.1-201ENST00000462203 316 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 AP000797.1-201ENST00000478870 387 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 RPS27P26-201ENST00000494583 239 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 AC112204.1-201ENST00000502591 103 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC2.72□□□□□ -1.97
TNFRSF4P43489 AC105313.1-201ENST00000509121 353 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.72□□□□□ -1.97
TNFRSF4P43489 AC114797.1-201ENST00000514003 728 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 RNA5SP282-201ENST00000516355 108 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
TNFRSF4P43489 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
TNFRSF4P43489 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.72□□□□□ -1.97
TNFRSF4P43489 AC123904.2-201ENST00000548059 300 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC2.72□□□□□ -1.97
TNFRSF4P43489 AL391261.3-201ENST00000557194 520 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.72□□□□□ -1.97
TNFRSF4P43489 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC2.72□□□□□ -1.97
TNFRSF4P43489 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.72□□□□□ -1.97
TNFRSF4P43489 MIR3146-201ENST00000580367 79 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 ABBA01006766.1-201ENST00000584728 294 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 MIR548AB-201ENST00000584917 84 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 AC083760.1-201ENST00000589621 670 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.72□□□□□ -1.97
TNFRSF4P43489 RPL23AP78-201ENST00000599928 470 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 AC121334.2-201ENST00000605387 271 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.72□□□□□ -1.97
TNFRSF4P43489 AC004832.5-201ENST00000608677 401 ntBASIC2.72□□□□□ -1.97
TNFRSF4P43489 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC2.72□□□□□ -1.97
TNFRSF4P43489 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 203.9 ms