Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.96□□□□□ -1.78
MSX2P35548 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
MSX2P35548 RNU6-190P-201ENST00000384154 102 ntBASIC3.96□□□□□ -1.78
MSX2P35548 RNU6-1222P-201ENST00000384615 107 ntBASIC3.96□□□□□ -1.78
MSX2P35548 RNU6-14P-201ENST00000384630 106 ntBASIC3.96□□□□□ -1.78
MSX2P35548 Y_RNA.574-201ENST00000384766 95 ntBASIC3.96□□□□□ -1.78
MSX2P35548 RNA5SP397-201ENST00000391323 118 ntBASIC3.96□□□□□ -1.78
MSX2P35548 AC110754.1-201ENST00000399740 601 ntBASIC3.96□□□□□ -1.78
MSX2P35548 AL139039.1-201ENST00000401900 692 ntBASIC3.96□□□□□ -1.78
MSX2P35548 RNA5SP111-201ENST00000411386 101 ntBASIC3.96□□□□□ -1.78
MSX2P35548 AC009310.1-201ENST00000414414 451 ntBASIC3.96□□□□□ -1.78
MSX2P35548 RAC1P3-201ENST00000416129 580 ntBASIC3.96□□□□□ -1.78
MSX2P35548 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.96□□□□□ -1.78
MSX2P35548 AC099677.1-201ENST00000420575 175 ntBASIC3.96□□□□□ -1.78
MSX2P35548 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.96□□□□□ -1.78
MSX2P35548 RSL24D1P6-201ENST00000426934 401 ntBASIC3.96□□□□□ -1.78
MSX2P35548 AC087650.1-201ENST00000431445 468 ntBASIC3.96□□□□□ -1.78
MSX2P35548 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.96□□□□□ -1.78
MSX2P35548 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC3.96□□□□□ -1.78
MSX2P35548 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.96□□□□□ -1.78
MSX2P35548 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.96□□□□□ -1.78
MSX2P35548 SNORD5.1-201ENST00000458800 75 ntBASIC3.96□□□□□ -1.78
MSX2P35548 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.96□□□□□ -1.78
MSX2P35548 RPS29P19-201ENST00000479709 171 ntBASIC3.96□□□□□ -1.78
MSX2P35548 VN1R105P-201ENST00000486595 910 ntBASIC3.96□□□□□ -1.78
MSX2P35548 AC026801.1-201ENST00000497178 464 ntBASIC3.96□□□□□ -1.78
MSX2P35548 AC078918.1-201ENST00000498515 228 ntBASIC3.96□□□□□ -1.78
MSX2P35548 KRTAP5-14P-201ENST00000502328 121 ntBASIC3.96□□□□□ -1.78
MSX2P35548 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.96□□□□□ -1.78
MSX2P35548 MTND4LP22-201ENST00000508209 276 ntBASIC3.96□□□□□ -1.78
MSX2P35548 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.96□□□□□ -1.78
MSX2P35548 RNU6-120P-201ENST00000516077 103 ntBASIC3.96□□□□□ -1.78
MSX2P35548 RNA5SP384-201ENST00000516615 116 ntBASIC3.96□□□□□ -1.78
MSX2P35548 RNA5SP143-201ENST00000516936 115 ntBASIC3.96□□□□□ -1.78
MSX2P35548 AC023442.1-201ENST00000531247 422 ntBASIC3.96□□□□□ -1.78
MSX2P35548 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.96□□□□□ -1.78
MSX2P35548 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.96□□□□□ -1.78
MSX2P35548 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC3.96□□□□□ -1.78
MSX2P35548 AC025946.2-201ENST00000603398 234 ntBASIC3.96□□□□□ -1.78
MSX2P35548 AL359547.2-201ENST00000615810 418 ntBASIC3.96□□□□□ -1.78
MSX2P35548 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC3.96□□□□□ -1.78
MSX2P35548 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
MSX2P35548 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC3.96□□□□□ -1.78
MSX2P35548 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
MSX2P35548 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
MSX2P35548 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
MSX2P35548 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
MSX2P35548 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
MSX2P35548 SNORD62.1-201ENST00000362541 86 ntBASIC3.95□□□□□ -1.78
MSX2P35548 RNU6-1155P-201ENST00000363554 107 ntBASIC3.95□□□□□ -1.78
MSX2P35548 RNU6-306P-201ENST00000384617 107 ntBASIC3.95□□□□□ -1.78
MSX2P35548 RNA5SP332-201ENST00000391063 115 ntBASIC3.95□□□□□ -1.78
MSX2P35548 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.95□□□□□ -1.78
MSX2P35548 RNU6-712P-201ENST00000410558 100 ntBASIC3.95□□□□□ -1.78
MSX2P35548 Z99755.1-201ENST00000414048 380 ntBASIC3.95□□□□□ -1.78
MSX2P35548 AC243428.1-201ENST00000421099 264 ntBASIC3.95□□□□□ -1.78
MSX2P35548 AC245028.1-201ENST00000423259 256 ntBASIC3.95□□□□□ -1.78
MSX2P35548 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.95□□□□□ -1.78
MSX2P35548 RPL23AP52-201ENST00000439311 478 ntBASIC3.95□□□□□ -1.78
MSX2P35548 AL359672.1-201ENST00000442302 409 ntBASIC3.95□□□□□ -1.78
MSX2P35548 NEFMP1-201ENST00000443423 1006 ntBASIC3.95□□□□□ -1.78
MSX2P35548 NOTCH2P1-201ENST00000443481 624 ntBASIC3.95□□□□□ -1.78
MSX2P35548 RN7SL459P-201ENST00000481078 302 ntBASIC3.95□□□□□ -1.78
MSX2P35548 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
MSX2P35548 AC110794.1-201ENST00000505816 425 ntBASIC3.95□□□□□ -1.78
MSX2P35548 AC116655.1-201ENST00000508324 901 ntBASIC3.95□□□□□ -1.78
MSX2P35548 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC3.95□□□□□ -1.78
MSX2P35548 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.95□□□□□ -1.78
MSX2P35548 MIR2114-201ENST00000516645 80 ntBASIC3.95□□□□□ -1.78
MSX2P35548 RNU6-1271P-201ENST00000517049 105 ntBASIC3.95□□□□□ -1.78
MSX2P35548 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.95□□□□□ -1.78
MSX2P35548 AP004371.1-201ENST00000525240 214 ntBASIC3.95□□□□□ -1.78
MSX2P35548 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.95□□□□□ -1.78
MSX2P35548 AL121603.1-201ENST00000553815 142 ntBASIC3.95□□□□□ -1.78
MSX2P35548 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.95□□□□□ -1.78
MSX2P35548 AC011494.1-201ENST00000596454 237 ntBASIC3.95□□□□□ -1.78
MSX2P35548 AC018889.1-201ENST00000605372 397 ntBASIC3.95□□□□□ -1.78
MSX2P35548 MIR378J-201ENST00000611988 109 ntBASIC3.95□□□□□ -1.78
MSX2P35548 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
MSX2P35548 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
MSX2P35548 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.95□□□□□ -1.78
MSX2P35548 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
MSX2P35548 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.95□□□□□ -1.78
MSX2P35548 CDC27P3-201ENST00000635418 1910 ntBASIC3.95□□□□□ -1.78
MSX2P35548 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
MSX2P35548 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.95□□□□□ -1.78
MSX2P35548 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
MSX2P35548 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.94□□□□□ -1.78
MSX2P35548 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
MSX2P35548 RNU1-115P-201ENST00000365329 160 ntBASIC3.94□□□□□ -1.78
MSX2P35548 RNA5SP167-201ENST00000365461 116 ntBASIC3.94□□□□□ -1.78
MSX2P35548 SNORA63.7-201ENST00000365579 123 ntBASIC3.94□□□□□ -1.78
MSX2P35548 RPS4XP7-201ENST00000406274 780 ntBASIC3.94□□□□□ -1.78
MSX2P35548 AC080125.1-201ENST00000414888 684 ntBASIC3.94□□□□□ -1.78
MSX2P35548 TMSB10P2-201ENST00000416049 131 ntBASIC3.94□□□□□ -1.78
MSX2P35548 TOMM22P1-201ENST00000418578 312 ntBASIC3.94□□□□□ -1.78
MSX2P35548 AL137014.1-201ENST00000420490 1226 ntBASIC3.94□□□□□ -1.78
MSX2P35548 USMG5P1-201ENST00000425964 177 ntBASIC3.94□□□□□ -1.78
MSX2P35548 AC068287.1-201ENST00000430283 295 ntBASIC3.94□□□□□ -1.78
MSX2P35548 USP9YP30-201ENST00000430729 455 ntBASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms