Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AP000238.1-201ENST00000608759 426 ntBASIC1.73□□□□□ -2.13
COL5A3P25940 AL161734.1-201ENST00000609720 557 ntBASIC1.73□□□□□ -2.13
COL5A3P25940 AC009237.15-201ENST00000610252 501 ntBASIC1.73□□□□□ -2.13
COL5A3P25940 AL158163.2-201ENST00000619110 700 ntBASIC1.73□□□□□ -2.13
COL5A3P25940 AC123767.1-202ENST00000620407 817 ntBASIC1.73□□□□□ -2.13
COL5A3P25940 AL157770.1-201ENST00000623049 439 ntBASIC1.73□□□□□ -2.13
COL5A3P25940 AC006963.1-201ENST00000624003 1052 ntBASIC1.73□□□□□ -2.13
COL5A3P25940 AP003485.1-201ENST00000625093 753 ntBASIC1.73□□□□□ -2.13
COL5A3P25940 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.73□□□□□ -2.13
COL5A3P25940 AC087821.2-201ENST00000637086 450 ntBASIC1.73□□□□□ -2.13
COL5A3P25940 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.73□□□□□ -2.13
COL5A3P25940 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
COL5A3P25940 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC1.72□□□□□ -2.13
COL5A3P25940 AC090740.1-201ENST00000623193 2262 ntBASIC1.72□□□□□ -2.13
COL5A3P25940 AC016716.1-201ENST00000265882 708 ntBASIC1.72□□□□□ -2.13
COL5A3P25940 UBE2Q2P1-202ENST00000354771 883 ntBASIC1.72□□□□□ -2.13
COL5A3P25940 RNU1-22P-201ENST00000363334 158 ntBASIC1.72□□□□□ -2.13
COL5A3P25940 RNU6-560P-201ENST00000364007 108 ntBASIC1.72□□□□□ -2.13
COL5A3P25940 RNA5SP139-201ENST00000364340 117 ntBASIC1.72□□□□□ -2.13
COL5A3P25940 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC1.72□□□□□ -2.13
COL5A3P25940 DEFB109C-201ENST00000382575 264 ntBASIC1.72□□□□□ -2.13
COL5A3P25940 DEFB109B-201ENST00000382656 264 ntBASIC1.72□□□□□ -2.13
COL5A3P25940 MTCO2P31-201ENST00000402702 684 ntBASIC1.72□□□□□ -2.13
COL5A3P25940 AL449283.1-202ENST00000418249 604 ntBASIC1.72□□□□□ -2.13
COL5A3P25940 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC1.72□□□□□ -2.13
COL5A3P25940 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC1.72□□□□□ -2.13
COL5A3P25940 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC1.72□□□□□ -2.13
COL5A3P25940 COX6CP18-201ENST00000448769 222 ntBASIC1.72□□□□□ -2.13
COL5A3P25940 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC1.72□□□□□ -2.13
COL5A3P25940 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC1.72□□□□□ -2.13
COL5A3P25940 VPS26AP1-201ENST00000483197 979 ntBASIC1.72□□□□□ -2.13
COL5A3P25940 AC134050.1-201ENST00000495088 933 ntBASIC1.72□□□□□ -2.13
COL5A3P25940 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC1.72□□□□□ -2.13
COL5A3P25940 SNORA31.8-201ENST00000516327 108 ntBASIC1.72□□□□□ -2.13
COL5A3P25940 RNU6-1073P-201ENST00000517182 106 ntBASIC1.72□□□□□ -2.13
COL5A3P25940 IGJP1-201ENST00000522682 475 ntBASIC1.72□□□□□ -2.13
COL5A3P25940 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
COL5A3P25940 MTCYBP23-201ENST00000558717 1102 ntBASIC1.72□□□□□ -2.13
COL5A3P25940 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC1.72□□□□□ -2.13
COL5A3P25940 MTCO2P2-201ENST00000591258 225 ntBASIC1.72□□□□□ -2.13
COL5A3P25940 OR10AB1P-201ENST00000609613 938 ntBASIC1.72□□□□□ -2.13
COL5A3P25940 AC024257.5-201ENST00000612739 531 ntBASIC1.72□□□□□ -2.13
COL5A3P25940 AL354685.2-201ENST00000448218 1447 ntBASIC1.72□□□□□ -2.13
COL5A3P25940 DDX10P1-201ENST00000448545 1933 ntBASIC1.72□□□□□ -2.13
COL5A3P25940 RNU6-619P-201ENST00000365146 108 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 RNU6-441P-201ENST00000384545 106 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 MIR627-201ENST00000384979 97 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 SLC9B1P2-201ENST00000398120 1184 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC1.71□□□□□ -2.13
COL5A3P25940 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC1.71□□□□□ -2.13
COL5A3P25940 AC099677.1-201ENST00000420575 175 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.71□□□□□ -2.13
COL5A3P25940 RPP40P1-201ENST00000426762 456 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 AC005345.1-201ENST00000431868 217 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 AL591704.1-201ENST00000432574 275 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC1.71□□□□□ -2.13
COL5A3P25940 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC1.71□□□□□ -2.13
COL5A3P25940 AC093155.1-201ENST00000440164 826 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 SNRPGP13-201ENST00000442212 177 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 COX6CP12-201ENST00000446748 202 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC1.71□□□□□ -2.13
COL5A3P25940 NAP1L1P3-201ENST00000462291 880 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 MTCO3P35-201ENST00000485582 781 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 KLRA1P-201ENST00000503499 986 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 AC096571.1-202ENST00000506634 735 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 RNU4ATAC10P-201ENST00000516967 122 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC1.71□□□□□ -2.13
COL5A3P25940 AP004607.1-201ENST00000524456 203 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 AP001804.3-201ENST00000525146 880 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 OR10V3P-201ENST00000525712 725 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC1.71□□□□□ -2.13
COL5A3P25940 RPL21P5-201ENST00000554662 472 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC1.71□□□□□ -2.13
COL5A3P25940 VN1R87P-201ENST00000596706 487 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC1.71□□□□□ -2.13
COL5A3P25940 AP005137.2-201ENST00000609238 400 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 AL157392.4-201ENST00000609756 345 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 AL355810.1-201ENST00000614629 552 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 uc_338.20-201ENST00000621563 178 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 AL512506.2-201ENST00000624472 458 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.71□□□□□ -2.13
COL5A3P25940 AL133216.2-202ENST00000634512 349 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 AC099654.9-201ENST00000637055 678 ntBASIC1.71□□□□□ -2.13
COL5A3P25940 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC1.71□□□□□ -2.14
COL5A3P25940 ZNF29P-201ENST00000225587 168 ntBASIC1.71□□□□□ -2.14
COL5A3P25940 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
COL5A3P25940 RNU6-730P-201ENST00000383954 104 ntBASIC1.71□□□□□ -2.14
COL5A3P25940 Y_RNA.472-201ENST00000384322 102 ntBASIC1.71□□□□□ -2.14
COL5A3P25940 MIR320A-201ENST00000385302 82 ntBASIC1.71□□□□□ -2.14
COL5A3P25940 TMSB4XP8-201ENST00000402089 135 ntBASIC1.71□□□□□ -2.14
COL5A3P25940 AL136310.1-201ENST00000404926 654 ntBASIC1.71□□□□□ -2.14
COL5A3P25940 RNU6-575P-201ENST00000411326 105 ntBASIC1.71□□□□□ -2.14
COL5A3P25940 TMSB4XP6-201ENST00000415187 135 ntBASIC1.71□□□□□ -2.14
COL5A3P25940 Z75741.2-201ENST00000417272 1167 ntBASIC1.71□□□□□ -2.14
COL5A3P25940 AC027644.1-201ENST00000419595 298 ntBASIC1.71□□□□□ -2.14
COL5A3P25940 MTND2P9-201ENST00000422293 931 ntBASIC1.71□□□□□ -2.14
COL5A3P25940 TMSB4XP1-201ENST00000424567 135 ntBASIC1.71□□□□□ -2.14
COL5A3P25940 RPL36P19-201ENST00000430744 301 ntBASIC1.71□□□□□ -2.14
COL5A3P25940 AC004854.1-201ENST00000440356 349 ntBASIC1.71□□□□□ -2.14
COL5A3P25940 PGBD4P3-201ENST00000440731 581 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms