Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RNU6-21P-201ENST00000384710 107 ntBASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 RPS4XP3-201ENST00000398541 413 ntBASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 RPS16P5-201ENST00000406501 404 ntBASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 DNAJC19P7-201ENST00000428811 344 ntBASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 REG1CP-206ENST00000447469 496 ntBASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 RN7SL354P-201ENST00000469282 294 ntBASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 RNU6-1278P-201ENST00000516130 107 ntBASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 SNORA31.8-201ENST00000516327 108 ntBASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 IGKV2-38-201ENST00000517443 247 ntBASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 AC107016.1-201ENST00000550463 337 ntBASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 AC126755.2-208ENST00000327792 462 ntBASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 AC138969.1-213ENST00000331436 462 ntBASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 Y_RNA.292-201ENST00000364904 97 ntBASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 RNU1-136P-201ENST00000384181 164 ntBASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 RNU6-514P-201ENST00000384208 107 ntBASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 Y_RNA.569-201ENST00000384749 103 ntBASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 MIR32-201ENST00000384965 70 ntBASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 UBA52P6-201ENST00000399822 382 ntBASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 RN7SKP114-201ENST00000410327 279 ntBASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 RNA5SP31-201ENST00000411144 127 ntBASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 SNORD108-201ENST00000459332 71 ntBASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 AC109925.1-201ENST00000478069 331 ntBASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 SNORA43.2-201ENST00000516652 128 ntBASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 RNU6-861P-201ENST00000516745 106 ntBASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 AC016256.1-201ENST00000547971 354 ntBASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 RPL21P7-201ENST00000557463 483 ntBASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 MIR4691-201ENST00000583764 85 ntBASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 AP000769.2-201ENST00000602344 396 ntBASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 AC136601.2-201ENST00000604356 474 ntBASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 AL356157.2-201ENST00000605122 111 ntBASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 MIR7703-201ENST00000620784 77 ntBASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 AC241585.2-209ENST00000638217 143 ntBASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 ABCC13-202ENST00000463099 3842 ntBASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LIMD1Q9UGP4 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
LIMD1Q9UGP4 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.46□□□□□ -1.53
LIMD1Q9UGP4 AC104964.3-201ENST00000606115 2860 ntBASIC5.46□□□□□ -1.53
LIMD1Q9UGP4 AC009962.1-201ENST00000567327 3813 ntBASIC5.46□□□□□ -1.53
LIMD1Q9UGP4 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 SNORA25.1-201ENST00000362326 128 ntBASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 RN7SKP145-201ENST00000363291 303 ntBASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 RNA5SP505-201ENST00000364748 108 ntBASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 RNY1P5-201ENST00000383890 115 ntBASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 SNORA70.6-201ENST00000383934 134 ntBASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 RNU6-142P-201ENST00000384019 107 ntBASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 RNU6-926P-201ENST00000384075 107 ntBASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 SNORA5.1-201ENST00000384275 131 ntBASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 RNU6-318P-201ENST00000384283 103 ntBASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 RPL19P1-201ENST00000411635 428 ntBASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 CR383656.1-201ENST00000484916 377 ntBASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 Y_RNA.662-201ENST00000516028 97 ntBASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 SNORA70.16-201ENST00000516390 95 ntBASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 BRDTP1-201ENST00000605735 677 ntBASIC5.46□□□□□ -1.54
LIMD1Q9UGP4 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 124.9 ms