Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.81□□□□□ -1.96
NKX3-1Q99801 SNORA31.3-201ENST00000516029 96 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.81□□□□□ -1.96
NKX3-1Q99801 AP003033.1-201ENST00000527244 415 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.81□□□□□ -1.96
NKX3-1Q99801 AC007458.1-201ENST00000542812 373 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC2.81□□□□□ -1.96
NKX3-1Q99801 RPL23AP84-201ENST00000571193 464 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC2.81□□□□□ -1.96
NKX3-1Q99801 AC024619.4-201ENST00000580924 316 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC2.81□□□□□ -1.96
NKX3-1Q99801 AC002545.1-201ENST00000592511 181 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC2.81□□□□□ -1.96
NKX3-1Q99801 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC2.81□□□□□ -1.96
NKX3-1Q99801 AC007179.3-201ENST00000604976 235 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 AC009570.1-201ENST00000609599 745 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.81□□□□□ -1.96
NKX3-1Q99801 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.81□□□□□ -1.96
NKX3-1Q99801 AL355365.1-201ENST00000616480 294 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 AC093648.1-201ENST00000623546 606 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.81□□□□□ -1.96
NKX3-1Q99801 MIR6863-201ENST00000636112 90 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 AC099654.12-201ENST00000639868 649 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 MTND5P1-201ENST00000445440 1375 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
NKX3-1Q99801 AC009487.2-201ENST00000420969 6821 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC2.8□□□□□ -1.96
NKX3-1Q99801 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.8□□□□□ -1.96
NKX3-1Q99801 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.8□□□□□ -1.96
NKX3-1Q99801 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
NKX3-1Q99801 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
NKX3-1Q99801 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
NKX3-1Q99801 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
NKX3-1Q99801 Y_RNA.367-201ENST00000365544 101 ntBASIC2.8□□□□□ -1.96
NKX3-1Q99801 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC2.8□□□□□ -1.96
NKX3-1Q99801 RNU6-641P-201ENST00000384006 107 ntBASIC2.8□□□□□ -1.96
NKX3-1Q99801 RNU6-1103P-201ENST00000384150 107 ntBASIC2.8□□□□□ -1.96
NKX3-1Q99801 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.8□□□□□ -1.96
NKX3-1Q99801 CALM2P3-201ENST00000400429 449 ntBASIC2.8□□□□□ -1.96
NKX3-1Q99801 RNU2-9P-201ENST00000410194 145 ntBASIC2.8□□□□□ -1.96
NKX3-1Q99801 Y_RNA.599-201ENST00000410489 109 ntBASIC2.8□□□□□ -1.96
NKX3-1Q99801 RNU2-39P-201ENST00000410604 198 ntBASIC2.8□□□□□ -1.96
NKX3-1Q99801 RNU4-55P-201ENST00000410731 137 ntBASIC2.8□□□□□ -1.96
NKX3-1Q99801 AF274854.1-201ENST00000413236 615 ntBASIC2.8□□□□□ -1.96
NKX3-1Q99801 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC2.8□□□□□ -1.96
NKX3-1Q99801 AC092809.3-201ENST00000415453 231 ntBASIC2.8□□□□□ -1.96
NKX3-1Q99801 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC2.8□□□□□ -1.96
NKX3-1Q99801 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.8□□□□□ -1.96
NKX3-1Q99801 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.8□□□□□ -1.96
NKX3-1Q99801 RPS3AP12-201ENST00000443616 753 ntBASIC2.8□□□□□ -1.96
NKX3-1Q99801 Z99127.3-201ENST00000448158 395 ntBASIC2.8□□□□□ -1.96
NKX3-1Q99801 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC2.8□□□□□ -1.96
NKX3-1Q99801 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.8□□□□□ -1.96
NKX3-1Q99801 KC877373.1-201ENST00000479066 408 ntBASIC2.8□□□□□ -1.96
NKX3-1Q99801 RN7SL283P-201ENST00000489055 303 ntBASIC2.8□□□□□ -1.96
NKX3-1Q99801 AC023194.1-201ENST00000493084 308 ntBASIC2.8□□□□□ -1.96
NKX3-1Q99801 FCF1P8-201ENST00000510322 597 ntBASIC2.8□□□□□ -1.96
NKX3-1Q99801 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.8□□□□□ -1.96
NKX3-1Q99801 SNORA70.24-201ENST00000517233 118 ntBASIC2.8□□□□□ -1.96
NKX3-1Q99801 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC2.8□□□□□ -1.96
NKX3-1Q99801 AC022690.1-201ENST00000526681 550 ntBASIC2.8□□□□□ -1.96
NKX3-1Q99801 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC2.8□□□□□ -1.96
NKX3-1Q99801 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC2.8□□□□□ -1.96
NKX3-1Q99801 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC2.8□□□□□ -1.96
NKX3-1Q99801 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC2.8□□□□□ -1.96
NKX3-1Q99801 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC2.8□□□□□ -1.96
NKX3-1Q99801 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.8□□□□□ -1.96
NKX3-1Q99801 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.8□□□□□ -1.96
NKX3-1Q99801 AC096577.2-201ENST00000611455 153 ntBASIC2.8□□□□□ -1.96
NKX3-1Q99801 SNORD39.4-201ENST00000620099 78 ntBASIC2.8□□□□□ -1.96
NKX3-1Q99801 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC2.8□□□□□ -1.96
NKX3-1Q99801 AC124864.2-201ENST00000624736 186 ntBASIC2.8□□□□□ -1.96
NKX3-1Q99801 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
NKX3-1Q99801 AC092435.3-201ENST00000565538 3654 ntBASIC2.8□□□□□ -1.96
NKX3-1Q99801 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
NKX3-1Q99801 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
NKX3-1Q99801 Y_RNA.1-201ENST00000352915 104 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 RNU6-108P-201ENST00000365558 107 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 SNORA24.1-201ENST00000384401 135 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 RNU6-780P-201ENST00000391030 104 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 RNU6-192P-201ENST00000391253 100 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
NKX3-1Q99801 MIR1290-201ENST00000408735 78 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
NKX3-1Q99801 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC2.79□□□□□ -1.96
NKX3-1Q99801 UBE2V1P10-201ENST00000414685 269 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 RPL32P35-201ENST00000415214 394 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 ZNF90P2-204ENST00000419323 1075 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 MED13P1-201ENST00000428342 171 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 AL356867.1-201ENST00000429623 299 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 AC073464.1-201ENST00000429823 534 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 AC002486.1-201ENST00000435098 391 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 RPL23AP22-201ENST00000437556 453 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 HIGD1AP11-201ENST00000438361 280 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 PIGFP3-201ENST00000441918 722 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 NDUFAF4P4-201ENST00000454883 502 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 AC013267.1-201ENST00000458227 267 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 RN7SL75P-201ENST00000461926 281 ntBASIC2.79□□□□□ -1.96
NKX3-1Q99801 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC2.79□□□□□ -1.96
NKX3-1Q99801 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 120.5 ms