Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 RPL35AP22-201ENST00000436855 335 ntBASIC1.93□□□□□ -2.1
CCDC112Q8NEF3 AC004383.1-201ENST00000438135 289 ntBASIC1.93□□□□□ -2.1
CCDC112Q8NEF3 HMGB1P18-201ENST00000438801 619 ntBASIC1.93□□□□□ -2.1
CCDC112Q8NEF3 AC007677.1-201ENST00000445757 515 ntBASIC1.93□□□□□ -2.1
CCDC112Q8NEF3 HMGN2P23-201ENST00000456759 269 ntBASIC1.93□□□□□ -2.1
CCDC112Q8NEF3 AC098591.2-201ENST00000510152 315 ntBASIC1.93□□□□□ -2.1
CCDC112Q8NEF3 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC1.93□□□□□ -2.1
CCDC112Q8NEF3 RNU6-362P-201ENST00000516736 90 ntBASIC1.93□□□□□ -2.1
CCDC112Q8NEF3 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC112Q8NEF3 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC112Q8NEF3 AC124947.2-202ENST00000552735 133 ntBASIC1.93□□□□□ -2.1
CCDC112Q8NEF3 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC112Q8NEF3 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC112Q8NEF3 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC1.93□□□□□ -2.1
CCDC112Q8NEF3 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC112Q8NEF3 AC080013.4-201ENST00000607624 649 ntBASIC1.93□□□□□ -2.1
CCDC112Q8NEF3 AC020658.4-201ENST00000613987 684 ntBASIC1.93□□□□□ -2.1
CCDC112Q8NEF3 AC004009.2-201ENST00000623016 728 ntBASIC1.93□□□□□ -2.1
CCDC112Q8NEF3 AC099063.3-201ENST00000642066 185 ntBASIC1.93□□□□□ -2.1
CCDC112Q8NEF3 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC112Q8NEF3 AC004520.1-201ENST00000608362 1413 ntBASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 RNU6-217P-201ENST00000384164 104 ntBASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 RNA5SP270-201ENST00000411361 118 ntBASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 AC092047.1-201ENST00000424997 240 ntBASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 AC093106.2-201ENST00000428212 385 ntBASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 HMGB1P9-201ENST00000429856 646 ntBASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 MTND2P5-201ENST00000432656 1006 ntBASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 AL158053.1-201ENST00000441503 453 ntBASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 AP1S2P1-201ENST00000457344 379 ntBASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 AC008379.1-201ENST00000463655 464 ntBASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 AC112518.2-201ENST00000508565 425 ntBASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 SCARNA15.2-201ENST00000516409 127 ntBASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 RNU2-19P-201ENST00000517288 84 ntBASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 AC068790.3-201ENST00000602988 553 ntBASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 DUXAP11-201ENST00000603858 526 ntBASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 AP000238.1-201ENST00000608759 426 ntBASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 UBE2Q2P6-201ENST00000612666 153 ntBASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC112Q8NEF3 MTCO1P4-201ENST00000520516 1409 ntBASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 AL590233.1-201ENST00000430017 456 ntBASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 OR10R1P-201ENST00000441524 1141 ntBASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 USP9YP15-201ENST00000442391 422 ntBASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 AC124916.1-201ENST00000444020 547 ntBASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 RPL7P12-201ENST00000446719 750 ntBASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 SEPT14P24-201ENST00000447236 180 ntBASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 RGS5-217ENST00000451759 835 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 AC079203.1-201ENST00000487972 404 ntBASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 AC022447.1-201ENST00000515358 464 ntBASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 RNU6-991P-201ENST00000516168 107 ntBASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 SNORA31.6-201ENST00000516241 130 ntBASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 AL021997.1-201ENST00000605757 193 ntBASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 AC026741.1-201ENST00000605892 482 ntBASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 AL391813.2-201ENST00000609113 322 ntBASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 AL627230.6-201ENST00000611129 280 ntBASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
CCDC112Q8NEF3 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
CCDC112Q8NEF3 RNU6-750P-201ENST00000390946 107 ntBASIC1.9□□□□□ -2.11
CCDC112Q8NEF3 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC112Q8NEF3 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC112Q8NEF3 AC018630.2-202ENST00000422992 927 ntBASIC1.9□□□□□ -2.11
CCDC112Q8NEF3 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC112Q8NEF3 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC112Q8NEF3 AC005297.2-201ENST00000450430 606 ntBASIC1.9□□□□□ -2.11
CCDC112Q8NEF3 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC1.9□□□□□ -2.11
CCDC112Q8NEF3 MRPL42P4-201ENST00000453267 443 ntBASIC1.9□□□□□ -2.11
CCDC112Q8NEF3 PMCHL2-203ENST00000457791 237 ntBASIC1.9□□□□□ -2.11
CCDC112Q8NEF3 CKS1BP2-201ENST00000497342 240 ntBASIC1.9□□□□□ -2.11
CCDC112Q8NEF3 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.9□□□□□ -2.11
CCDC112Q8NEF3 AC022447.3-201ENST00000506865 495 ntBASIC1.9□□□□□ -2.11
CCDC112Q8NEF3 AC010460.2-201ENST00000509054 677 ntBASIC1.9□□□□□ -2.11
CCDC112Q8NEF3 AC023632.1-201ENST00000518463 375 ntBASIC1.9□□□□□ -2.11
CCDC112Q8NEF3 AP003066.2-201ENST00000529375 555 ntBASIC1.9□□□□□ -2.11
CCDC112Q8NEF3 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC112Q8NEF3 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC1.9□□□□□ -2.11
CCDC112Q8NEF3 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
CCDC112Q8NEF3 AC079148.1-201ENST00000565944 819 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms