Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC092608.2-201ENST00000624427 218 ntBASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 MIR7515-201ENST00000637837 67 ntBASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 PABPC1P9-201ENST00000426076 1612 ntBASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 AL391994.1-201ENST00000254724 282 ntBASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 Y_RNA.245-201ENST00000364493 95 ntBASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 NDUFB4P4-201ENST00000404822 243 ntBASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 ELOCP14-201ENST00000428070 331 ntBASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 MTND1P28-201ENST00000435623 950 ntBASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 RPS15AP5-201ENST00000436276 388 ntBASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 RPS12P2-201ENST00000439728 269 ntBASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 ELOCP7-201ENST00000439968 331 ntBASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 CECR9-201ENST00000453421 199 ntBASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 AC073901.1-201ENST00000462471 408 ntBASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 SNORA31.11-201ENST00000516528 139 ntBASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 RN7SKP258-201ENST00000517151 304 ntBASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 EIF4BP1-201ENST00000554881 351 ntBASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 LARP7P3-201ENST00000579888 337 ntBASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 MIR4999-201ENST00000585029 91 ntBASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 AL033523.1-201ENST00000605153 153 ntBASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 OR2AS2P-201ENST00000606902 342 ntBASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 AC103710.1-201ENST00000610003 901 ntBASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
CCDC40Q4G0X9 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC40Q4G0X9 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.74□□□□□ -1.97
CCDC40Q4G0X9 RNU6-1167P-201ENST00000363227 94 ntBASIC2.74□□□□□ -1.97
CCDC40Q4G0X9 RNU5A-8P-201ENST00000364102 114 ntBASIC2.74□□□□□ -1.97
CCDC40Q4G0X9 RNU1-138P-201ENST00000384093 164 ntBASIC2.74□□□□□ -1.97
CCDC40Q4G0X9 MIR34A-201ENST00000385130 110 ntBASIC2.74□□□□□ -1.97
CCDC40Q4G0X9 TAS2R15P-201ENST00000390674 928 ntBASIC2.74□□□□□ -1.97
CCDC40Q4G0X9 RNU2-49P-201ENST00000410666 184 ntBASIC2.74□□□□□ -1.97
CCDC40Q4G0X9 AC078974.1-201ENST00000411597 223 ntBASIC2.74□□□□□ -1.97
CCDC40Q4G0X9 RPL17P12-201ENST00000413391 526 ntBASIC2.74□□□□□ -1.97
CCDC40Q4G0X9 RPL22P18-201ENST00000417197 377 ntBASIC2.74□□□□□ -1.97
CCDC40Q4G0X9 MTCO2P17-201ENST00000424336 677 ntBASIC2.74□□□□□ -1.97
CCDC40Q4G0X9 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC2.74□□□□□ -1.97
CCDC40Q4G0X9 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.74□□□□□ -1.97
CCDC40Q4G0X9 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC40Q4G0X9 AC133134.1-201ENST00000466800 359 ntBASIC2.74□□□□□ -1.97
CCDC40Q4G0X9 EIF4EP3-201ENST00000498782 656 ntBASIC2.74□□□□□ -1.97
CCDC40Q4G0X9 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC2.74□□□□□ -1.97
CCDC40Q4G0X9 SNORA31.18-201ENST00000517043 134 ntBASIC2.74□□□□□ -1.97
CCDC40Q4G0X9 MTATP6P15-201ENST00000527233 835 ntBASIC2.74□□□□□ -1.97
CCDC40Q4G0X9 DEFB108A-201ENST00000530110 222 ntBASIC2.74□□□□□ -1.97
CCDC40Q4G0X9 MIR4307-201ENST00000582802 84 ntBASIC2.74□□□□□ -1.97
CCDC40Q4G0X9 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 MTND5P29-201ENST00000458676 1807 ntBASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 Y_RNA.18-201ENST00000362461 102 ntBASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 RNU6-253P-201ENST00000384730 105 ntBASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 ANAPC10P1-201ENST00000395991 556 ntBASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 RPS24P7-201ENST00000416921 246 ntBASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 AC019097.1-201ENST00000424783 735 ntBASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 AC063976.3-201ENST00000426849 329 ntBASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 SUMO1P4-201ENST00000429430 302 ntBASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 FCF1P1-201ENST00000432690 571 ntBASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 AC107626.1-201ENST00000471084 183 ntBASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 RPL23AP41-201ENST00000484754 458 ntBASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 AC105252.1-201ENST00000503089 286 ntBASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 RNU6-415P-201ENST00000516252 97 ntBASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 OR4R1P-201ENST00000529879 463 ntBASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 AC090888.2-201ENST00000559765 1144 ntBASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 AC098826.3-201ENST00000603823 466 ntBASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 AL161798.1-201ENST00000604630 131 ntBASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 AC025588.2-201ENST00000604851 466 ntBASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 AC021755.4-201ENST00000616620 456 ntBASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 AL031667.3-201ENST00000620124 655 ntBASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 AC068787.1-201ENST00000623908 691 ntBASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.73□□□□□ -1.97
CCDC40Q4G0X9 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 186.9 ms