Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC025588.3-201ENST00000604182 274 ntBASIC1.74□□□□□ -2.13
CCDC88AQ3V6T2 AL356585.4-201ENST00000623078 1229 ntBASIC1.74□□□□□ -2.13
CCDC88AQ3V6T2 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.74□□□□□ -2.13
CCDC88AQ3V6T2 AL133216.2-202ENST00000634512 349 ntBASIC1.74□□□□□ -2.13
CCDC88AQ3V6T2 MFSD8-213ENST00000641134 1327 ntBASIC1.74□□□□□ -2.13
CCDC88AQ3V6T2 SGO1P1-201ENST00000603525 1447 ntBASIC1.74□□□□□ -2.13
CCDC88AQ3V6T2 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 Y_RNA.36-201ENST00000362602 112 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 RNU5D-1-201ENST00000363299 116 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 RNU1-22P-201ENST00000363334 158 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 SNORA68.1-201ENST00000364537 132 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 RNU6-198P-201ENST00000384258 104 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 SNORA67.6-201ENST00000391093 99 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 RPS3AP24-201ENST00000407896 734 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 AL356867.1-201ENST00000429623 299 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 UBE2FP3-201ENST00000436366 524 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 IPO7P1-201ENST00000442031 636 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 AL050341.1-201ENST00000447743 313 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 SUMO2P2-201ENST00000456482 255 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 RPL21P47-201ENST00000483696 477 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 SNORA31.24-201ENST00000517232 57 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 AC079597.1-201ENST00000624306 508 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 MIR4275-201ENST00000636486 87 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 MTND5P11-201ENST00000511037 1812 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 CR848007.1-201ENST00000442354 1699 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 RNU6-1005P-201ENST00000384519 107 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 MT-TC-201ENST00000387405 66 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 AL030996.1-201ENST00000411430 235 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 ARL2BPP3-201ENST00000421226 480 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 AC012497.1-201ENST00000429392 575 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 BMI1P1-201ENST00000445879 941 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 AL135752.1-201ENST00000479477 471 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 AC114322.1-201ENST00000506771 926 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 MIR449C-201ENST00000516047 92 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 MIR3660-201ENST00000584845 100 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 MIR3199-2-201ENST00000636243 86 ntBASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC1.73□□□□□ -2.13
CCDC88AQ3V6T2 TPTE2P4-201ENST00000258589 1605 ntBASIC1.72□□□□□ -2.13
CCDC88AQ3V6T2 GDI2P1-201ENST00000429312 1336 ntBASIC1.72□□□□□ -2.13
CCDC88AQ3V6T2 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
CCDC88AQ3V6T2 MIR16-1-201ENST00000385271 89 ntBASIC1.72□□□□□ -2.13
CCDC88AQ3V6T2 RNU6-882P-201ENST00000391025 103 ntBASIC1.72□□□□□ -2.13
CCDC88AQ3V6T2 ZFAND6P1-201ENST00000434138 605 ntBASIC1.72□□□□□ -2.13
CCDC88AQ3V6T2 AL445687.1-201ENST00000439946 251 ntBASIC1.72□□□□□ -2.13
CCDC88AQ3V6T2 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC1.72□□□□□ -2.13
CCDC88AQ3V6T2 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC1.72□□□□□ -2.13
CCDC88AQ3V6T2 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC1.72□□□□□ -2.13
CCDC88AQ3V6T2 AC006499.2-201ENST00000513470 337 ntBASIC1.72□□□□□ -2.13
CCDC88AQ3V6T2 RNU5F-8P-201ENST00000515941 111 ntBASIC1.72□□□□□ -2.13
CCDC88AQ3V6T2 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC1.72□□□□□ -2.13
CCDC88AQ3V6T2 AP000254.1-201ENST00000609934 520 ntBASIC1.72□□□□□ -2.13
CCDC88AQ3V6T2 AC011330.2-201ENST00000621680 635 ntBASIC1.72□□□□□ -2.13
CCDC88AQ3V6T2 RNU6-1155P-201ENST00000363554 107 ntBASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 RNU6-932P-201ENST00000391108 106 ntBASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 AC074117.2-201ENST00000417130 397 ntBASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 COX6CP12-201ENST00000446748 202 ntBASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 RPL21P134-201ENST00000453468 483 ntBASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 RNA5SP233-201ENST00000459153 113 ntBASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 AC092757.1-201ENST00000467293 467 ntBASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 RPL31P60-201ENST00000478450 367 ntBASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 SUMO2P6-201ENST00000505273 288 ntBASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 COX7A2P2-201ENST00000505291 250 ntBASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 MIR514B-201ENST00000516774 80 ntBASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 AP003066.2-201ENST00000529375 555 ntBASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 U73023.1-201ENST00000603134 700 ntBASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 NUTF2P8-201ENST00000604593 363 ntBASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 AC006213.4-201ENST00000616184 634 ntBASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 AL359851.1-201ENST00000569460 4997 ntBASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 Y_RNA.374-201ENST00000365606 101 ntBASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 MIR598-201ENST00000384868 97 ntBASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 RNU2-15P-201ENST00000410692 191 ntBASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 RNU4-27P-201ENST00000410889 139 ntBASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 RNU7-26P-201ENST00000458980 63 ntBASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 SNORD19.2-201ENST00000516978 73 ntBASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC1.71□□□□□ -2.14
CCDC88AQ3V6T2 FAM60BP-201ENST00000578364 658 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms