Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC011458.1-201ENST00000604034 617 ntBASIC1.75□□□□□ -2.13
COL5A3P25940 AC069431.2-201ENST00000604149 1099 ntBASIC1.75□□□□□ -2.13
COL5A3P25940 AL138478.1-201ENST00000612252 832 ntBASIC1.75□□□□□ -2.13
COL5A3P25940 AC016597.2-201ENST00000613256 341 ntBASIC1.75□□□□□ -2.13
COL5A3P25940 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
COL5A3P25940 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
COL5A3P25940 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC1.75□□□□□ -2.13
COL5A3P25940 SGO1P1-201ENST00000603525 1447 ntBASIC1.75□□□□□ -2.13
COL5A3P25940 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
COL5A3P25940 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
COL5A3P25940 RNU6-1066P-201ENST00000363573 105 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC1.74□□□□□ -2.13
COL5A3P25940 CD24P4-201ENST00000382840 243 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 MIR122-201ENST00000385044 85 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 RNU6-837P-201ENST00000391056 108 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 MTCO1P56-201ENST00000401674 224 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC1.74□□□□□ -2.13
COL5A3P25940 AC106883.1-201ENST00000418805 562 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 HMGN2P38-201ENST00000423806 265 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 PTGES3P1-201ENST00000439531 483 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 MTND4LP16-201ENST00000440828 295 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC1.74□□□□□ -2.13
COL5A3P25940 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC1.74□□□□□ -2.13
COL5A3P25940 MTCYBP42-201ENST00000444653 1130 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC1.74□□□□□ -2.13
COL5A3P25940 BX248409.1-201ENST00000455497 255 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC1.74□□□□□ -2.13
COL5A3P25940 RPS20P24-201ENST00000457473 361 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 AC087879.1-201ENST00000474343 374 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 AC015724.1-201ENST00000478577 156 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 RPS27P23-201ENST00000487608 251 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 AC093281.2-201ENST00000510153 597 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC1.74□□□□□ -2.13
COL5A3P25940 OR5AQ1P-201ENST00000527596 927 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC1.74□□□□□ -2.13
COL5A3P25940 AC136443.5-201ENST00000603741 370 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 AL078603.1-201ENST00000603824 313 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC1.74□□□□□ -2.13
COL5A3P25940 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC1.74□□□□□ -2.13
COL5A3P25940 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.74□□□□□ -2.13
COL5A3P25940 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC1.74□□□□□ -2.13
COL5A3P25940 MTND4P9-201ENST00000507819 1346 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 AC068700.1-201ENST00000565862 3754 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 AC111188.2-201ENST00000529697 1387 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
COL5A3P25940 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC1.74□□□□□ -2.13
COL5A3P25940 RNU6-335P-201ENST00000364563 113 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 SNORA14A-201ENST00000364773 135 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
COL5A3P25940 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC1.74□□□□□ -2.13
COL5A3P25940 RNU6-549P-201ENST00000384433 107 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 RNU2-42P-201ENST00000410697 113 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC1.74□□□□□ -2.13
COL5A3P25940 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC1.74□□□□□ -2.13
COL5A3P25940 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC1.74□□□□□ -2.13
COL5A3P25940 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC1.74□□□□□ -2.13
COL5A3P25940 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.74□□□□□ -2.13
COL5A3P25940 AC004223.1-201ENST00000479840 271 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 HMGN1P7-201ENST00000491722 313 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
COL5A3P25940 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
COL5A3P25940 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
COL5A3P25940 AC006390.1-201ENST00000508068 283 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 AC016065.2-201ENST00000514530 444 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
COL5A3P25940 Y_RNA.675-201ENST00000516389 149 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.74□□□□□ -2.13
COL5A3P25940 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC1.74□□□□□ -2.13
COL5A3P25940 AC139103.1-201ENST00000534696 1030 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC1.74□□□□□ -2.13
COL5A3P25940 AC023813.2-201ENST00000564321 469 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 AL390240.1-201ENST00000612950 384 ntBASIC1.74□□□□□ -2.13
COL5A3P25940 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC1.74□□□□□ -2.13
COL5A3P25940 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC1.74□□□□□ -2.13
COL5A3P25940 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC1.74□□□□□ -2.13
COL5A3P25940 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
COL5A3P25940 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
COL5A3P25940 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
COL5A3P25940 AL596028.1-201ENST00000326971 197 ntBASIC1.73□□□□□ -2.13
COL5A3P25940 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
COL5A3P25940 Y_RNA.30-201ENST00000362572 97 ntBASIC1.73□□□□□ -2.13
COL5A3P25940 RNU5E-10P-201ENST00000363506 118 ntBASIC1.73□□□□□ -2.13
COL5A3P25940 RNU6-263P-201ENST00000363811 107 ntBASIC1.73□□□□□ -2.13
COL5A3P25940 Y_RNA.205-201ENST00000364128 113 ntBASIC1.73□□□□□ -2.13
COL5A3P25940 MIR16-1-201ENST00000385271 89 ntBASIC1.73□□□□□ -2.13
COL5A3P25940 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC1.73□□□□□ -2.13
COL5A3P25940 RPL21P32-201ENST00000419877 477 ntBASIC1.73□□□□□ -2.13
COL5A3P25940 OFD1P2Y-201ENST00000421895 1149 ntBASIC1.73□□□□□ -2.13
COL5A3P25940 OR10R1P-201ENST00000441524 1141 ntBASIC1.73□□□□□ -2.13
COL5A3P25940 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC1.73□□□□□ -2.13
COL5A3P25940 RPS24P6-201ENST00000452670 400 ntBASIC1.73□□□□□ -2.13
COL5A3P25940 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC1.73□□□□□ -2.13
COL5A3P25940 AC091860.1-201ENST00000505723 432 ntBASIC1.73□□□□□ -2.13
COL5A3P25940 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC1.73□□□□□ -2.13
COL5A3P25940 MTCO1P47-201ENST00000523889 1271 ntBASIC1.73□□□□□ -2.13
COL5A3P25940 AP004371.1-201ENST00000525240 214 ntBASIC1.73□□□□□ -2.13
COL5A3P25940 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC1.73□□□□□ -2.13
COL5A3P25940 DPRXP5-201ENST00000604662 539 ntBASIC1.73□□□□□ -2.13
COL5A3P25940 AC112220.2-201ENST00000605513 533 ntBASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms