Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC1.86□□□□□ -2.11
APOEP02649 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC1.86□□□□□ -2.11
APOEP02649 AC007229.1-201ENST00000590455 412 ntBASIC1.86□□□□□ -2.11
APOEP02649 AC078899.2-201ENST00000595282 212 ntBASIC1.86□□□□□ -2.11
APOEP02649 AC109809.1-201ENST00000619665 545 ntBASIC1.86□□□□□ -2.11
APOEP02649 AC084824.4-201ENST00000620106 731 ntBASIC1.86□□□□□ -2.11
APOEP02649 AC073592.7-201ENST00000623659 507 ntBASIC1.86□□□□□ -2.11
APOEP02649 AC241585.2-209ENST00000638217 143 ntBASIC1.86□□□□□ -2.11
APOEP02649 AL390862.1-201ENST00000635467 1469 ntBASIC1.86□□□□□ -2.11
APOEP02649 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
APOEP02649 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.85□□□□□ -2.11
APOEP02649 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.85□□□□□ -2.11
APOEP02649 MIR16-2-201ENST00000362117 81 ntBASIC1.85□□□□□ -2.11
APOEP02649 MIR1294-201ENST00000408503 142 ntBASIC1.85□□□□□ -2.11
APOEP02649 RNU2-33P-201ENST00000410344 192 ntBASIC1.85□□□□□ -2.11
APOEP02649 SNORD56-201ENST00000413522 71 ntBASIC1.85□□□□□ -2.11
APOEP02649 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC1.85□□□□□ -2.11
APOEP02649 MTATP6P27-201ENST00000416987 621 ntBASIC1.85□□□□□ -2.11
APOEP02649 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1.85□□□□□ -2.11
APOEP02649 MICF-203ENST00000432679 129 ntBASIC1.85□□□□□ -2.11
APOEP02649 AC124916.1-201ENST00000444020 547 ntBASIC1.85□□□□□ -2.11
APOEP02649 AC007677.1-201ENST00000445757 515 ntBASIC1.85□□□□□ -2.11
APOEP02649 PMCHL2-203ENST00000457791 237 ntBASIC1.85□□□□□ -2.11
APOEP02649 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.85□□□□□ -2.11
APOEP02649 RPS29P11-201ENST00000496507 171 ntBASIC1.85□□□□□ -2.11
APOEP02649 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC1.85□□□□□ -2.11
APOEP02649 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.85□□□□□ -2.11
APOEP02649 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC1.85□□□□□ -2.11
APOEP02649 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
APOEP02649 AC093677.1-201ENST00000514414 678 ntBASIC1.85□□□□□ -2.11
APOEP02649 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC1.85□□□□□ -2.11
APOEP02649 MIR4419B-201ENST00000577260 68 ntBASIC1.85□□□□□ -2.11
APOEP02649 MIR4666A-201ENST00000580160 79 ntBASIC1.85□□□□□ -2.11
APOEP02649 AC025165.5-201ENST00000602802 578 ntBASIC1.85□□□□□ -2.11
APOEP02649 MTND1P37-201ENST00000636562 264 ntBASIC1.85□□□□□ -2.11
APOEP02649 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC1.85□□□□□ -2.11
APOEP02649 HSPA8P4-201ENST00000511877 1920 ntBASIC1.85□□□□□ -2.11
APOEP02649 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
APOEP02649 AC103710.2-202ENST00000641454 2853 ntBASIC1.84□□□□□ -2.11
APOEP02649 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.84□□□□□ -2.11
APOEP02649 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
APOEP02649 SUGT1P1-201ENST00000379514 476 ntBASIC1.84□□□□□ -2.11
APOEP02649 MIR888-201ENST00000401186 77 ntBASIC1.84□□□□□ -2.11
APOEP02649 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.84□□□□□ -2.11
APOEP02649 RPL30P4-201ENST00000429309 333 ntBASIC1.84□□□□□ -2.11
APOEP02649 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC1.84□□□□□ -2.11
APOEP02649 OFD1P3Y-201ENST00000453312 783 ntBASIC1.84□□□□□ -2.11
APOEP02649 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC1.84□□□□□ -2.11
APOEP02649 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.84□□□□□ -2.11
APOEP02649 AC026410.2-201ENST00000460281 156 ntBASIC1.84□□□□□ -2.11
APOEP02649 RPS15AP17-201ENST00000470598 390 ntBASIC1.84□□□□□ -2.11
APOEP02649 AC020699.1-201ENST00000505161 445 ntBASIC1.84□□□□□ -2.11
APOEP02649 AC112518.2-201ENST00000508565 425 ntBASIC1.84□□□□□ -2.11
APOEP02649 RNU6-751P-201ENST00000516382 101 ntBASIC1.84□□□□□ -2.11
APOEP02649 RNU6-548P-201ENST00000517083 115 ntBASIC1.84□□□□□ -2.11
APOEP02649 AC006518.2-201ENST00000542513 940 ntBASIC1.84□□□□□ -2.11
APOEP02649 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC1.84□□□□□ -2.11
APOEP02649 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC1.84□□□□□ -2.11
APOEP02649 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC1.84□□□□□ -2.11
APOEP02649 DEFB122-202ENST00000569013 197 ntBASIC1.84□□□□□ -2.11
APOEP02649 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.84□□□□□ -2.11
APOEP02649 AL158211.4-201ENST00000606988 584 ntBASIC1.84□□□□□ -2.11
APOEP02649 AC007349.4-201ENST00000608114 532 ntBASIC1.84□□□□□ -2.11
APOEP02649 AP000238.1-201ENST00000608759 426 ntBASIC1.84□□□□□ -2.11
APOEP02649 AL118556.2-201ENST00000614375 824 ntBASIC1.84□□□□□ -2.11
APOEP02649 AC005296.1-201ENST00000616145 209 ntBASIC1.84□□□□□ -2.11
APOEP02649 MTCO1P9-201ENST00000505577 1534 ntBASIC1.84□□□□□ -2.11
APOEP02649 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
APOEP02649 OR5T3-201ENST00000303059 1023 ntBASIC1.83□□□□□ -2.12
APOEP02649 RNU1-39P-201ENST00000383897 165 ntBASIC1.83□□□□□ -2.12
APOEP02649 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
APOEP02649 AL450338.1-201ENST00000407987 512 ntBASIC1.83□□□□□ -2.12
APOEP02649 RPS20P15-201ENST00000412792 311 ntBASIC1.83□□□□□ -2.12
APOEP02649 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC1.83□□□□□ -2.12
APOEP02649 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.83□□□□□ -2.12
APOEP02649 AC096649.2-201ENST00000416186 393 ntBASIC1.83□□□□□ -2.12
APOEP02649 BPY2DP-201ENST00000422208 265 ntBASIC1.83□□□□□ -2.12
APOEP02649 AC003685.2-201ENST00000422795 395 ntBASIC1.83□□□□□ -2.12
APOEP02649 XKRYP1-201ENST00000423438 492 ntBASIC1.83□□□□□ -2.12
APOEP02649 XKRYP2-201ENST00000432915 492 ntBASIC1.83□□□□□ -2.12
APOEP02649 AL591806.2-201ENST00000433122 173 ntBASIC1.83□□□□□ -2.12
APOEP02649 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.83□□□□□ -2.12
APOEP02649 TPT1P14-201ENST00000448018 505 ntBASIC1.83□□□□□ -2.12
APOEP02649 AC117522.2-201ENST00000510049 657 ntBASIC1.83□□□□□ -2.12
APOEP02649 LTV1P1-201ENST00000510683 1237 ntBASIC1.83□□□□□ -2.12
APOEP02649 MIR892C-201ENST00000516410 77 ntBASIC1.83□□□□□ -2.12
APOEP02649 snoZ278.1-201ENST00000517059 112 ntBASIC1.83□□□□□ -2.12
APOEP02649 RNA5SP291-201ENST00000517222 105 ntBASIC1.83□□□□□ -2.12
APOEP02649 RNU2-19P-201ENST00000517288 84 ntBASIC1.83□□□□□ -2.12
APOEP02649 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC1.83□□□□□ -2.12
APOEP02649 AL359212.1-201ENST00000556608 614 ntBASIC1.83□□□□□ -2.12
APOEP02649 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC1.83□□□□□ -2.12
APOEP02649 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC1.83□□□□□ -2.12
APOEP02649 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
APOEP02649 AC024614.2-201ENST00000577584 372 ntBASIC1.83□□□□□ -2.12
APOEP02649 MIR4287-201ENST00000579398 78 ntBASIC1.83□□□□□ -2.12
APOEP02649 MIR3618-201ENST00000580330 88 ntBASIC1.83□□□□□ -2.12
APOEP02649 AP002906.1-201ENST00000603405 233 ntBASIC1.83□□□□□ -2.12
APOEP02649 AL355297.2-201ENST00000604792 129 ntBASIC1.83□□□□□ -2.12
APOEP02649 AC010678.1-201ENST00000614118 713 ntBASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms