Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.37□□□□□ -2.19
CCDC88BA6NC98 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC1.37□□□□□ -2.19
CCDC88BA6NC98 AC025165.5-201ENST00000602802 578 ntBASIC1.37□□□□□ -2.19
CCDC88BA6NC98 FAM157B-203ENST00000639350 358 ntBASIC1.37□□□□□ -2.19
CCDC88BA6NC98 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
CCDC88BA6NC98 AC008669.1-201ENST00000565823 2178 ntBASIC1.37□□□□□ -2.19
CCDC88BA6NC98 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC1.37□□□□□ -2.19
CCDC88BA6NC98 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.37□□□□□ -2.19
CCDC88BA6NC98 RNU6-17P-201ENST00000384245 107 ntBASIC1.37□□□□□ -2.19
CCDC88BA6NC98 RNU6-18P-201ENST00000384527 107 ntBASIC1.37□□□□□ -2.19
CCDC88BA6NC98 MORN2-203ENST00000409131 544 ntTSL 5 BASIC1.37□□□□□ -2.19
CCDC88BA6NC98 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC1.37□□□□□ -2.19
CCDC88BA6NC98 AL133384.1-201ENST00000412744 351 ntBASIC1.37□□□□□ -2.19
CCDC88BA6NC98 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.37□□□□□ -2.19
CCDC88BA6NC98 OR51AB1P-201ENST00000429046 620 ntBASIC1.37□□□□□ -2.19
CCDC88BA6NC98 AC005410.1-202ENST00000460347 485 ntBASIC1.37□□□□□ -2.19
CCDC88BA6NC98 SYPL1P1-201ENST00000473622 768 ntBASIC1.37□□□□□ -2.19
CCDC88BA6NC98 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC1.37□□□□□ -2.19
CCDC88BA6NC98 MIR6513-201ENST00000621188 64 ntBASIC1.37□□□□□ -2.19
CCDC88BA6NC98 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC1.36□□□□□ -2.19
CCDC88BA6NC98 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.36□□□□□ -2.19
CCDC88BA6NC98 EZH2P1-201ENST00000431167 291 ntBASIC1.36□□□□□ -2.19
CCDC88BA6NC98 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
CCDC88BA6NC98 TRBV8-1-201ENST00000481590 279 ntBASIC1.36□□□□□ -2.19
CCDC88BA6NC98 AC091965.2-201ENST00000512324 613 ntBASIC1.36□□□□□ -2.19
CCDC88BA6NC98 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC1.36□□□□□ -2.19
CCDC88BA6NC98 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC1.36□□□□□ -2.19
CCDC88BA6NC98 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC1.36□□□□□ -2.19
CCDC88BA6NC98 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC1.36□□□□□ -2.19
CCDC88BA6NC98 AC109454.4-201ENST00000623411 649 ntBASIC1.36□□□□□ -2.19
CCDC88BA6NC98 AC095031.1-201ENST00000623685 672 ntBASIC1.36□□□□□ -2.19
CCDC88BA6NC98 RBBP8P1-201ENST00000449447 1844 ntBASIC1.35□□□□□ -2.19
CCDC88BA6NC98 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.35□□□□□ -2.19
CCDC88BA6NC98 AL512604.1-201ENST00000404812 257 ntBASIC1.35□□□□□ -2.19
CCDC88BA6NC98 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC1.35□□□□□ -2.19
CCDC88BA6NC98 AC055731.1-201ENST00000474387 401 ntBASIC1.35□□□□□ -2.19
CCDC88BA6NC98 AC093770.1-201ENST00000511559 571 ntBASIC1.35□□□□□ -2.19
CCDC88BA6NC98 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC1.35□□□□□ -2.19
CCDC88BA6NC98 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC1.35□□□□□ -2.19
CCDC88BA6NC98 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC1.35□□□□□ -2.19
CCDC88BA6NC98 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC1.35□□□□□ -2.19
CCDC88BA6NC98 AL590095.2-201ENST00000604136 117 ntBASIC1.35□□□□□ -2.19
CCDC88BA6NC98 AL450336.1-201ENST00000605180 586 ntBASIC1.35□□□□□ -2.19
CCDC88BA6NC98 AC018755.4-201ENST00000619715 454 ntBASIC1.35□□□□□ -2.19
CCDC88BA6NC98 UCA1.1-201ENST00000620952 75 ntBASIC1.35□□□□□ -2.19
CCDC88BA6NC98 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.35□□□□□ -2.19
CCDC88BA6NC98 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.35□□□□□ -2.19
CCDC88BA6NC98 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC1.35□□□□□ -2.19
CCDC88BA6NC98 Z80107.1-201ENST00000436830 412 ntBASIC1.34□□□□□ -2.19
CCDC88BA6NC98 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC1.34□□□□□ -2.19
CCDC88BA6NC98 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC1.34□□□□□ -2.19
CCDC88BA6NC98 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC1.34□□□□□ -2.19
CCDC88BA6NC98 MTCYBP23-201ENST00000558717 1102 ntBASIC1.34□□□□□ -2.19
CCDC88BA6NC98 MIR1273G-201ENST00000577677 100 ntBASIC1.34□□□□□ -2.19
CCDC88BA6NC98 AC105245.1-201ENST00000581934 244 ntBASIC1.34□□□□□ -2.19
CCDC88BA6NC98 AC096772.1-201ENST00000609146 564 ntBASIC1.34□□□□□ -2.19
CCDC88BA6NC98 AL137003.2-201ENST00000606924 2538 ntBASIC1.34□□□□□ -2.2
CCDC88BA6NC98 AC007785.2-201ENST00000598627 1916 ntBASIC1.33□□□□□ -2.2
CCDC88BA6NC98 SNORD114-2-201ENST00000363953 78 ntBASIC1.33□□□□□ -2.2
CCDC88BA6NC98 AL513475.1-201ENST00000406602 315 ntBASIC1.33□□□□□ -2.2
CCDC88BA6NC98 MIR1250-201ENST00000408098 113 ntBASIC1.33□□□□□ -2.2
CCDC88BA6NC98 RNA5SP193-201ENST00000410353 107 ntBASIC1.33□□□□□ -2.2
CCDC88BA6NC98 MTCYBP24-201ENST00000420387 1106 ntBASIC1.33□□□□□ -2.2
CCDC88BA6NC98 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC1.33□□□□□ -2.2
CCDC88BA6NC98 SDAD1P3-201ENST00000427380 333 ntBASIC1.33□□□□□ -2.2
CCDC88BA6NC98 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC1.33□□□□□ -2.2
CCDC88BA6NC98 AC234064.1-201ENST00000436312 247 ntBASIC1.33□□□□□ -2.2
CCDC88BA6NC98 AC004383.1-201ENST00000438135 289 ntBASIC1.33□□□□□ -2.2
CCDC88BA6NC98 SNRPGP6-201ENST00000451124 220 ntBASIC1.33□□□□□ -2.2
CCDC88BA6NC98 AC025588.4-201ENST00000615802 908 ntBASIC1.33□□□□□ -2.2
CCDC88BA6NC98 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC1.33□□□□□ -2.2
CCDC88BA6NC98 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC1.33□□□□□ -2.2
CCDC88BA6NC98 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.33□□□□□ -2.2
CCDC88BA6NC98 SUCLA2P2-201ENST00000417269 1309 ntBASIC1.33□□□□□ -2.2
CCDC88BA6NC98 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.33□□□□□ -2.2
CCDC88BA6NC98 RNU6-1331P-201ENST00000363658 106 ntBASIC1.32□□□□□ -2.2
CCDC88BA6NC98 SNORA68.1-201ENST00000364537 132 ntBASIC1.32□□□□□ -2.2
CCDC88BA6NC98 MIR147B-201ENST00000390185 80 ntBASIC1.32□□□□□ -2.2
CCDC88BA6NC98 MTND4P11-201ENST00000417020 1058 ntBASIC1.32□□□□□ -2.2
CCDC88BA6NC98 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC1.32□□□□□ -2.2
CCDC88BA6NC98 EIF4EP4-201ENST00000424916 578 ntBASIC1.32□□□□□ -2.2
CCDC88BA6NC98 OFD1P12Y-201ENST00000427963 1207 ntBASIC1.32□□□□□ -2.2
CCDC88BA6NC98 RPS27AP10-201ENST00000496103 208 ntBASIC1.32□□□□□ -2.2
CCDC88BA6NC98 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC1.32□□□□□ -2.2
CCDC88BA6NC98 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC1.32□□□□□ -2.2
CCDC88BA6NC98 Y_RNA.681-201ENST00000516445 113 ntBASIC1.32□□□□□ -2.2
CCDC88BA6NC98 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC1.32□□□□□ -2.2
CCDC88BA6NC98 AC104997.1-201ENST00000519761 717 ntBASIC1.32□□□□□ -2.2
CCDC88BA6NC98 AL391834.1-201ENST00000609609 560 ntBASIC1.32□□□□□ -2.2
CCDC88BA6NC98 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC1.32□□□□□ -2.2
CCDC88BA6NC98 Y_RNA.68-201ENST00000362881 102 ntBASIC1.31□□□□□ -2.2
CCDC88BA6NC98 RNU1-105P-201ENST00000363470 161 ntBASIC1.31□□□□□ -2.2
CCDC88BA6NC98 MIR936-201ENST00000401264 98 ntBASIC1.31□□□□□ -2.2
CCDC88BA6NC98 HNRNPDP2-201ENST00000406475 478 ntBASIC1.31□□□□□ -2.2
CCDC88BA6NC98 AL356320.2-201ENST00000417263 507 ntBASIC1.31□□□□□ -2.2
CCDC88BA6NC98 USP12PX-201ENST00000432383 1057 ntBASIC1.31□□□□□ -2.2
CCDC88BA6NC98 AL691517.1-201ENST00000440833 1235 ntBASIC1.31□□□□□ -2.2
CCDC88BA6NC98 RPL23AP6-201ENST00000446637 472 ntBASIC1.31□□□□□ -2.2
CCDC88BA6NC98 AC098862.1-201ENST00000504991 413 ntBASIC1.31□□□□□ -2.2
CCDC88BA6NC98 RNU6-351P-201ENST00000516097 100 ntBASIC1.31□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms