Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 Y_RNA.477-201ENST00000384352 108 ntBASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 RNU6ATAC16P-201ENST00000408591 138 ntBASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 ELOCP20-201ENST00000422460 345 ntBASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 AC008065.1-201ENST00000428525 348 ntBASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 RPL21P91-201ENST00000429231 479 ntBASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 AL133396.1-201ENST00000432048 687 ntBASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 AC090774.1-201ENST00000435925 246 ntBASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 RPL23AP52-201ENST00000439311 478 ntBASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 AC008264.1-201ENST00000447612 367 ntBASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 NUTF2P3-201ENST00000448540 384 ntBASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 RPS11P1-201ENST00000451072 473 ntBASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 SNORD127-201ENST00000458892 86 ntBASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 MTND3P25-201ENST00000509243 135 ntBASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 CYCSP29-201ENST00000533731 318 ntBASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 AC007375.1-201ENST00000554513 578 ntBASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 AC233702.9-201ENST00000581528 203 ntBASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 AC093227.2-201ENST00000589357 285 ntBASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 AC091905.2-201ENST00000623143 306 ntBASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 SCN1A-220ENST00000641603 12506 ntBASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 RNU6-1155P-201ENST00000363554 107 ntBASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 Y_RNA.214-201ENST00000364201 112 ntBASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 RNU4-42P-201ENST00000364738 142 ntBASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 CRP-202ENST00000368110 667 ntTSL 3 BASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 RPL23AP26-201ENST00000412728 464 ntBASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 PGBD4P6-201ENST00000421501 610 ntBASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 PPP1R11P2-201ENST00000423543 382 ntBASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 RPL23AP25-201ENST00000430973 463 ntBASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 PCMTD1P1-201ENST00000455560 355 ntBASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 AC105137.1-201ENST00000484355 562 ntBASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 RPS27AP13-201ENST00000498403 237 ntBASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 PARP4P3-201ENST00000510265 317 ntBASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 AC008489.1-201ENST00000524271 483 ntBASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 AC136624.4-201ENST00000573044 370 ntBASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 AL160290.3-201ENST00000604869 165 ntBASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 HMGN2P28-201ENST00000606102 262 ntBASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 uc_338.13-201ENST00000618243 179 ntBASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 MIR6891-201ENST00000618788 93 ntBASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 AC008669.1-201ENST00000565823 2178 ntBASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CHMP3Q9Y3E7 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 STK31-205ENST00000433467 3085 ntTSL 2 BASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 RNU6-1156P-201ENST00000410365 100 ntBASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 AL137014.1-201ENST00000420490 1226 ntBASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 AC073063.1-201ENST00000434352 607 ntBASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 RPS26P2-201ENST00000440331 348 ntBASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 OR2AQ1P-201ENST00000451972 200 ntBASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 IFNWP4-201ENST00000453148 294 ntBASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 RPL23AP31-201ENST00000456160 467 ntBASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 RPL17P19-201ENST00000489069 552 ntBASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 HMGB3P17-201ENST00000504195 649 ntBASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 AP003385.6-201ENST00000531603 374 ntBASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 CBX3P8-201ENST00000532412 525 ntBASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 OR4H12P-201ENST00000556269 907 ntBASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 MIR4716-201ENST00000579628 84 ntBASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 RAC1P9-201ENST00000604990 392 ntBASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 AC103858.2-201ENST00000621471 543 ntBASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CHMP3Q9Y3E7 MAPK10-320ENST00000641462 6696 ntBASIC5.47□□□□□ -1.53
CHMP3Q9Y3E7 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC5.47□□□□□ -1.53
CHMP3Q9Y3E7 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
CHMP3Q9Y3E7 AC092435.4-201ENST00000623012 4159 ntBASIC5.47□□□□□ -1.53
CHMP3Q9Y3E7 Y_RNA.64-201ENST00000362845 102 ntBASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms