Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 AC068135.2-201ENST00000569293 1028 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 RPL12P50-201ENST00000603116 116 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 AC007621.1-201ENST00000604544 437 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 AL355816.2-201ENST00000610049 647 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 U4.3-201ENST00000621047 82 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 AL136313.1-201ENST00000624804 202 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 SCARNA15.3-201ENST00000626315 122 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 SCARNA4.1-201ENST00000628597 123 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 AC243829.7-201ENST00000633081 225 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 RNU1-109P-201ENST00000383960 147 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 RPL21P24-201ENST00000413752 448 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 RPL23AP39-201ENST00000415533 405 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AC005005.2-201ENST00000420779 380 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AL451054.2-201ENST00000420896 202 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AC099548.1-201ENST00000421443 426 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 BNIP3P2-201ENST00000441221 577 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 PIGFP3-201ENST00000441918 722 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 MTATP6P30-201ENST00000443540 664 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 GDI2P2-201ENST00000445131 608 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 ELOCP30-201ENST00000447108 299 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 RPL23AP20-201ENST00000447965 421 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AC008481.1-201ENST00000463278 396 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AC010631.1-201ENST00000474150 156 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AC098799.2-201ENST00000509466 868 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AL356575.1-201ENST00000603008 283 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AP000403.1-201ENST00000603349 851 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 MTCYBP22-201ENST00000603788 447 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AC112187.2-201ENST00000604345 283 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 Z99289.3-201ENST00000605586 594 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AC004908.2-201ENST00000609090 574 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AL391813.2-201ENST00000609113 322 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 OR10AB1P-201ENST00000609613 938 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AC073308.1-201ENST00000623696 305 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AC097655.1-201ENST00000635075 318 ntBASIC2.82□□□□□ -1.96
VPS54Q9P1Q0 AC010680.1-201ENST00000590024 3590 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 Y_RNA.46-201ENST00000362695 102 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 RNU6-1180P-201ENST00000364935 107 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 TEX41-202ENST00000414256 604 ntTSL 5 BASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 AL513477.1-202ENST00000417061 214 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 AC092047.1-201ENST00000424997 240 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 AC098826.1-201ENST00000433943 471 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 RPL37P21-201ENST00000435890 276 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 AC129850.1-201ENST00000436203 508 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 AL714022.1-201ENST00000439897 151 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 BMI1P1-201ENST00000445879 941 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 AC092798.1-201ENST00000458542 409 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 RNU7-125P-201ENST00000458760 62 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 RNU7-59P-201ENST00000459101 61 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 AC008571.1-201ENST00000467232 300 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 AC116337.2-201ENST00000477662 156 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 KC877373.1-201ENST00000479066 408 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 CDC42P4-201ENST00000510507 563 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 AC119751.5-201ENST00000514077 770 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 AC004486.1-201ENST00000546846 233 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 AC008015.1-201ENST00000555505 465 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 TRAV28-201ENST00000557548 323 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 AC090888.1-201ENST00000561335 1141 ntBASIC2.81□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 130.9 ms