Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RNU4-73P-201ENST00000363164 141 ntBASIC3.96□□□□□ -1.78
TDP1Q9NUW8 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.96□□□□□ -1.78
TDP1Q9NUW8 Y_RNA.509-201ENST00000384506 99 ntBASIC3.96□□□□□ -1.78
TDP1Q9NUW8 RNU6-831P-201ENST00000384548 107 ntBASIC3.96□□□□□ -1.78
TDP1Q9NUW8 MIR607-201ENST00000385241 96 ntBASIC3.96□□□□□ -1.78
TDP1Q9NUW8 AL122016.1-201ENST00000403365 367 ntBASIC3.96□□□□□ -1.78
TDP1Q9NUW8 HSPE1P8-201ENST00000406997 288 ntBASIC3.96□□□□□ -1.78
TDP1Q9NUW8 RPS12P24-201ENST00000412619 387 ntBASIC3.96□□□□□ -1.78
TDP1Q9NUW8 AC007390.1-201ENST00000415722 356 ntBASIC3.96□□□□□ -1.78
TDP1Q9NUW8 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.96□□□□□ -1.78
TDP1Q9NUW8 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.96□□□□□ -1.78
TDP1Q9NUW8 AL451050.1-201ENST00000450126 415 ntBASIC3.96□□□□□ -1.78
TDP1Q9NUW8 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.96□□□□□ -1.78
TDP1Q9NUW8 RNU6-329P-201ENST00000459618 107 ntBASIC3.96□□□□□ -1.78
TDP1Q9NUW8 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC3.96□□□□□ -1.78
TDP1Q9NUW8 RPL21P93-201ENST00000480465 489 ntBASIC3.96□□□□□ -1.78
TDP1Q9NUW8 AC083904.1-201ENST00000487828 231 ntBASIC3.96□□□□□ -1.78
TDP1Q9NUW8 AC103851.1-201ENST00000506833 274 ntBASIC3.96□□□□□ -1.78
TDP1Q9NUW8 AC005921.1-201ENST00000510589 286 ntBASIC3.96□□□□□ -1.78
TDP1Q9NUW8 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.96□□□□□ -1.78
TDP1Q9NUW8 RN7SKP256-201ENST00000517201 314 ntBASIC3.96□□□□□ -1.78
TDP1Q9NUW8 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC3.96□□□□□ -1.78
TDP1Q9NUW8 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC3.96□□□□□ -1.78
TDP1Q9NUW8 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.96□□□□□ -1.78
TDP1Q9NUW8 MIR3921-201ENST00000577308 85 ntBASIC3.96□□□□□ -1.78
TDP1Q9NUW8 CTHRC1P1-201ENST00000605383 469 ntBASIC3.96□□□□□ -1.78
TDP1Q9NUW8 AC087045.1-201ENST00000605856 382 ntBASIC3.96□□□□□ -1.78
TDP1Q9NUW8 AC009570.1-201ENST00000609599 745 ntBASIC3.96□□□□□ -1.78
TDP1Q9NUW8 uc_338.5-201ENST00000611839 155 ntBASIC3.96□□□□□ -1.78
TDP1Q9NUW8 AC034102.8-201ENST00000615146 484 ntBASIC3.96□□□□□ -1.78
TDP1Q9NUW8 AP003400.5-201ENST00000624827 617 ntBASIC3.96□□□□□ -1.78
TDP1Q9NUW8 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.96□□□□□ -1.78
TDP1Q9NUW8 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
TDP1Q9NUW8 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.96□□□□□ -1.78
TDP1Q9NUW8 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.96□□□□□ -1.78
TDP1Q9NUW8 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
TDP1Q9NUW8 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.96□□□□□ -1.78
TDP1Q9NUW8 HSPA8P4-201ENST00000511877 1920 ntBASIC3.95□□□□□ -1.78
TDP1Q9NUW8 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.95□□□□□ -1.78
TDP1Q9NUW8 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.95□□□□□ -1.78
TDP1Q9NUW8 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
TDP1Q9NUW8 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
TDP1Q9NUW8 MIR448-201ENST00000362131 111 ntBASIC3.95□□□□□ -1.78
TDP1Q9NUW8 RNU6-600P-201ENST00000362524 99 ntBASIC3.95□□□□□ -1.78
TDP1Q9NUW8 RNU6-82P-201ENST00000363970 107 ntBASIC3.95□□□□□ -1.78
TDP1Q9NUW8 MIR3074-201ENST00000384885 81 ntBASIC3.95□□□□□ -1.78
TDP1Q9NUW8 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
TDP1Q9NUW8 AL139039.1-201ENST00000401900 692 ntBASIC3.95□□□□□ -1.78
TDP1Q9NUW8 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC3.95□□□□□ -1.78
TDP1Q9NUW8 AC091390.3-201ENST00000426478 338 ntBASIC3.95□□□□□ -1.78
TDP1Q9NUW8 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC3.95□□□□□ -1.78
TDP1Q9NUW8 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.95□□□□□ -1.78
TDP1Q9NUW8 RPL7P49-201ENST00000471402 708 ntBASIC3.95□□□□□ -1.78
TDP1Q9NUW8 TRBV1-201ENST00000476502 284 ntBASIC3.95□□□□□ -1.78
TDP1Q9NUW8 AP000926.1-201ENST00000479573 241 ntBASIC3.95□□□□□ -1.78
TDP1Q9NUW8 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
TDP1Q9NUW8 FGF7P4-201ENST00000509595 295 ntBASIC3.95□□□□□ -1.78
TDP1Q9NUW8 AL359273.1-201ENST00000510918 627 ntBASIC3.95□□□□□ -1.78
TDP1Q9NUW8 SCARNA15.2-201ENST00000516409 127 ntBASIC3.95□□□□□ -1.78
TDP1Q9NUW8 AC069240.1-201ENST00000548774 375 ntBASIC3.95□□□□□ -1.78
TDP1Q9NUW8 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.95□□□□□ -1.78
TDP1Q9NUW8 OR11H5P-201ENST00000554039 926 ntBASIC3.95□□□□□ -1.78
TDP1Q9NUW8 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.95□□□□□ -1.78
TDP1Q9NUW8 MIR4719-201ENST00000585233 84 ntBASIC3.95□□□□□ -1.78
TDP1Q9NUW8 AL132765.2-201ENST00000610812 351 ntBASIC3.95□□□□□ -1.78
TDP1Q9NUW8 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.95□□□□□ -1.78
TDP1Q9NUW8 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
TDP1Q9NUW8 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
TDP1Q9NUW8 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.94□□□□□ -1.78
TDP1Q9NUW8 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.94□□□□□ -1.78
TDP1Q9NUW8 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.94□□□□□ -1.78
TDP1Q9NUW8 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.94□□□□□ -1.78
TDP1Q9NUW8 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
TDP1Q9NUW8 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
TDP1Q9NUW8 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
TDP1Q9NUW8 Y_RNA.530-201ENST00000384587 101 ntBASIC3.94□□□□□ -1.78
TDP1Q9NUW8 SNORD70.1-201ENST00000391007 85 ntBASIC3.94□□□□□ -1.78
TDP1Q9NUW8 POLHP1-201ENST00000411806 470 ntBASIC3.94□□□□□ -1.78
TDP1Q9NUW8 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.94□□□□□ -1.78
TDP1Q9NUW8 AC080125.1-201ENST00000414888 684 ntBASIC3.94□□□□□ -1.78
TDP1Q9NUW8 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
TDP1Q9NUW8 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.94□□□□□ -1.78
TDP1Q9NUW8 HSPE1P1-201ENST00000421494 318 ntBASIC3.94□□□□□ -1.78
TDP1Q9NUW8 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.94□□□□□ -1.78
TDP1Q9NUW8 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC3.94□□□□□ -1.78
TDP1Q9NUW8 AL591704.1-201ENST00000432574 275 ntBASIC3.94□□□□□ -1.78
TDP1Q9NUW8 HMGB3P11-201ENST00000440127 604 ntBASIC3.94□□□□□ -1.78
TDP1Q9NUW8 SNRPGP5-201ENST00000456003 220 ntBASIC3.94□□□□□ -1.78
TDP1Q9NUW8 RNU7-66P-201ENST00000459469 62 ntBASIC3.94□□□□□ -1.78
TDP1Q9NUW8 AC087588.1-201ENST00000462203 316 ntBASIC3.94□□□□□ -1.78
TDP1Q9NUW8 RPL31P13-201ENST00000484151 370 ntBASIC3.94□□□□□ -1.78
TDP1Q9NUW8 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.94□□□□□ -1.78
TDP1Q9NUW8 AC025554.1-201ENST00000505641 188 ntBASIC3.94□□□□□ -1.78
TDP1Q9NUW8 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.94□□□□□ -1.78
TDP1Q9NUW8 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.94□□□□□ -1.78
TDP1Q9NUW8 RNA5SP154-201ENST00000516193 111 ntBASIC3.94□□□□□ -1.78
TDP1Q9NUW8 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.94□□□□□ -1.78
TDP1Q9NUW8 RANP9-201ENST00000519957 271 ntBASIC3.94□□□□□ -1.78
TDP1Q9NUW8 AC105029.1-201ENST00000520250 669 ntBASIC3.94□□□□□ -1.78
TDP1Q9NUW8 IGKV2D-19-201ENST00000523346 262 ntBASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 125.6 ms