Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AP005205.1-201ENST00000563503 508 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC2.83□□□□□ -1.96
NKX3-1Q99801 AC010546.1-201ENST00000569391 485 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 AC015917.1-201ENST00000579654 510 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 AC098848.2-201ENST00000588023 330 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 AC068790.2-201ENST00000602601 557 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 AL021997.1-201ENST00000605757 193 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC2.83□□□□□ -1.96
NKX3-1Q99801 AC004492.1-201ENST00000607036 742 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 AF250324.2-201ENST00000608299 610 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 uc_338.1-201ENST00000612113 180 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.83□□□□□ -1.96
NKX3-1Q99801 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.83□□□□□ -1.96
NKX3-1Q99801 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.83□□□□□ -1.96
NKX3-1Q99801 U6.105-201ENST00000637379 88 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 SDAD1P2-201ENST00000441308 2028 ntBASIC2.83□□□□□ -1.96
NKX3-1Q99801 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
NKX3-1Q99801 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
NKX3-1Q99801 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC2.83□□□□□ -1.96
NKX3-1Q99801 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
NKX3-1Q99801 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.83□□□□□ -1.96
NKX3-1Q99801 ZNF807-201ENST00000328088 1707 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 MTND5P29-201ENST00000458676 1807 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
NKX3-1Q99801 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.82□□□□□ -1.96
NKX3-1Q99801 RNU6-960P-201ENST00000364056 120 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 Y_RNA.381-201ENST00000365666 102 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 DYNLT3P1-201ENST00000378574 347 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 RNU6-74P-201ENST00000384235 107 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 MIR490-201ENST00000384865 128 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 RNU6-1197P-201ENST00000391183 107 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 SNORA48.8-201ENST00000391324 134 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 AC068050.1-201ENST00000394891 380 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 AL513331.1-201ENST00000411908 397 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 AC063979.1-201ENST00000415539 377 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 BTF3L4P3-201ENST00000418879 476 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC2.82□□□□□ -1.96
NKX3-1Q99801 AL353193.1-201ENST00000421444 268 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.82□□□□□ -1.96
NKX3-1Q99801 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.82□□□□□ -1.96
NKX3-1Q99801 TAAR7P-201ENST00000436141 242 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 NDUFB4P6-201ENST00000436819 366 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2.82□□□□□ -1.96
NKX3-1Q99801 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC2.82□□□□□ -1.96
NKX3-1Q99801 RNA5SP310-201ENST00000459084 116 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 SNORD97-201ENST00000459187 142 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 RPL9P33-201ENST00000484311 566 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 AC007182.2-201ENST00000489251 402 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 AC093663.1-201ENST00000497190 394 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2.82□□□□□ -1.96
NKX3-1Q99801 RNA5SP471-201ENST00000516971 106 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 RNA5SP380-201ENST00000517190 98 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.82□□□□□ -1.96
NKX3-1Q99801 AC016957.1-201ENST00000534895 309 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.82□□□□□ -1.96
NKX3-1Q99801 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.82□□□□□ -1.96
NKX3-1Q99801 AC124947.2-202ENST00000552735 133 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 SUB1P2-201ENST00000556401 297 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 NCAPGP2-201ENST00000557911 754 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 RPL21P12-201ENST00000559810 515 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC2.82□□□□□ -1.96
NKX3-1Q99801 EIF1P4-201ENST00000572664 335 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC2.82□□□□□ -1.96
NKX3-1Q99801 AC025449.1-201ENST00000603896 529 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 AC007684.1-201ENST00000609671 477 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 AL158209.2-201ENST00000619266 216 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 AC073476.4-201ENST00000628409 72 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 ABBA01000935.2-201ENST00000637477 838 ntBASIC2.82□□□□□ -1.96
NKX3-1Q99801 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
NKX3-1Q99801 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC2.82□□□□□ -1.96
NKX3-1Q99801 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.82□□□□□ -1.96
NKX3-1Q99801 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC2.81□□□□□ -1.96
NKX3-1Q99801 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.81□□□□□ -1.96
NKX3-1Q99801 RNU6-288P-201ENST00000363690 104 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 RNU6-946P-201ENST00000383878 107 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 Y_RNA.409-201ENST00000383990 98 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 RNU6-1215P-201ENST00000384441 102 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 RNVU1-14-201ENST00000384770 164 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 RNA5SP229-201ENST00000410809 99 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.81□□□□□ -1.96
NKX3-1Q99801 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC2.81□□□□□ -1.96
NKX3-1Q99801 NDUFB4P5-201ENST00000415445 361 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.81□□□□□ -1.96
NKX3-1Q99801 MTCO2P19-201ENST00000427513 598 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 AC007919.1-201ENST00000429380 217 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 CYCSP4-201ENST00000429682 331 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 AL159987.2-201ENST00000432754 307 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 OR2B8P-201ENST00000432841 938 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 GPR143P-201ENST00000434155 205 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 RPS20P5-201ENST00000434808 360 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 NEFMP1-201ENST00000443423 1006 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 AC009237.8-201ENST00000445492 379 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 CBWD4P-201ENST00000445695 655 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
NKX3-1Q99801 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC2.81□□□□□ -1.96
NKX3-1Q99801 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC2.81□□□□□ -1.96
NKX3-1Q99801 AL135752.1-201ENST00000479477 471 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 RN7SL432P-201ENST00000484057 298 ntBASIC2.81□□□□□ -1.96
NKX3-1Q99801 RPL32P34-201ENST00000486380 400 ntBASIC2.81□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 143.4 ms