Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC4.11□□□□□ -1.75
NUP88Q99567 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.11□□□□□ -1.75
NUP88Q99567 RPL21P10-201ENST00000463521 490 ntBASIC4.11□□□□□ -1.75
NUP88Q99567 AL163973.1-201ENST00000484753 577 ntBASIC4.11□□□□□ -1.75
NUP88Q99567 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC4.11□□□□□ -1.75
NUP88Q99567 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
NUP88Q99567 RNA5SP401-201ENST00000515920 127 ntBASIC4.11□□□□□ -1.75
NUP88Q99567 RNU6-123P-201ENST00000516163 102 ntBASIC4.11□□□□□ -1.75
NUP88Q99567 RNU6-927P-201ENST00000516199 100 ntBASIC4.11□□□□□ -1.75
NUP88Q99567 OR5BN1P-201ENST00000532955 829 ntBASIC4.11□□□□□ -1.75
NUP88Q99567 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC4.11□□□□□ -1.75
NUP88Q99567 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC4.11□□□□□ -1.75
NUP88Q99567 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC4.11□□□□□ -1.75
NUP88Q99567 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.11□□□□□ -1.75
NUP88Q99567 MIR4775-201ENST00000581168 75 ntBASIC4.11□□□□□ -1.75
NUP88Q99567 AC012409.4-201ENST00000612923 249 ntBASIC4.11□□□□□ -1.75
NUP88Q99567 AC130324.3-201ENST00000614165 542 ntBASIC4.11□□□□□ -1.75
NUP88Q99567 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
NUP88Q99567 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.11□□□□□ -1.75
NUP88Q99567 MTND5P1-201ENST00000445440 1375 ntBASIC4.11□□□□□ -1.75
NUP88Q99567 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC4.11□□□□□ -1.75
NUP88Q99567 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
NUP88Q99567 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
NUP88Q99567 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.1□□□□□ -1.75
NUP88Q99567 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
NUP88Q99567 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
NUP88Q99567 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.1□□□□□ -1.75
NUP88Q99567 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
NUP88Q99567 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
NUP88Q99567 HSPA8P1-201ENST00000425843 1833 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
NUP88Q99567 Y_RNA.89-201ENST00000363031 102 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 Y_RNA.255-201ENST00000364581 97 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
NUP88Q99567 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC4.1□□□□□ -1.75
NUP88Q99567 Y_RNA.576-201ENST00000384781 102 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 MIR491-201ENST00000384877 84 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 RNU6-817P-201ENST00000391083 104 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 RN7SKP285-201ENST00000410137 318 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 RNU6-387P-201ENST00000411331 105 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 RN7SKP53-201ENST00000411337 315 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC4.1□□□□□ -1.75
NUP88Q99567 AC092809.3-201ENST00000415453 231 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 AC005300.1-201ENST00000428401 373 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC4.1□□□□□ -1.75
NUP88Q99567 GTF2IP20-201ENST00000431663 360 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 AC000111.3-201ENST00000433478 193 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 RPS3AP12-201ENST00000443616 753 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 AC009237.8-201ENST00000445492 379 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 FGF7P6-202ENST00000451282 293 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 HMGN2P16-201ENST00000456802 261 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.1□□□□□ -1.75
NUP88Q99567 FAM92A1P2-202ENST00000504766 877 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 AC026784.1-201ENST00000507986 352 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC4.1□□□□□ -1.75
NUP88Q99567 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC4.1□□□□□ -1.75
NUP88Q99567 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
NUP88Q99567 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC4.1□□□□□ -1.75
NUP88Q99567 AC004024.1-201ENST00000549244 247 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 NRBF2P5-201ENST00000603087 788 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC4.1□□□□□ -1.75
NUP88Q99567 MIR8058-201ENST00000615737 89 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 AL359547.2-201ENST00000615810 418 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 ATM-228ENST00000639240 498 ntTSL 5 BASIC4.1□□□□□ -1.75
NUP88Q99567 ATM-230ENST00000640388 578 ntTSL 5 BASIC4.1□□□□□ -1.75
NUP88Q99567 RPS4XP5-202ENST00000449995 1334 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 CKAP2P1-201ENST00000555477 2049 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 MTND4P14-201ENST00000435799 1354 ntBASIC4.1□□□□□ -1.75
NUP88Q99567 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
NUP88Q99567 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.1□□□□□ -1.75
NUP88Q99567 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
NUP88Q99567 AL049781.1-201ENST00000623195 3585 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
NUP88Q99567 AC006020.1-201ENST00000420179 1854 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
NUP88Q99567 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC4.09□□□□□ -1.75
NUP88Q99567 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC4.09□□□□□ -1.75
NUP88Q99567 AC073346.2-201ENST00000624724 2058 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
NUP88Q99567 AL133383.2-201ENST00000622958 2336 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
NUP88Q99567 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
NUP88Q99567 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
NUP88Q99567 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
NUP88Q99567 UBE2L2-201ENST00000254302 429 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 Y_RNA.38-201ENST00000362617 102 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 SNORD115-7-201ENST00000365306 82 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC4.09□□□□□ -1.75
NUP88Q99567 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.09□□□□□ -1.75
NUP88Q99567 TRAPPC2P4-201ENST00000421750 331 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 CALM2P2-201ENST00000428512 440 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC4.09□□□□□ -1.75
NUP88Q99567 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC4.09□□□□□ -1.75
NUP88Q99567 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC4.09□□□□□ -1.75
NUP88Q99567 AC092573.2-201ENST00000434546 243 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 PIGFP3-201ENST00000441918 722 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 CACYBPP2-201ENST00000453625 678 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 GMFBP1-201ENST00000467831 427 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 RPL31P58-201ENST00000469001 379 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 HMGB3P15-201ENST00000507326 574 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 137.4 ms