Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.91□□□□□ -1.94
VMP1Q96GC9 MIR3167-201ENST00000579623 85 ntBASIC2.91□□□□□ -1.94
VMP1Q96GC9 MIR3200-201ENST00000580767 85 ntBASIC2.91□□□□□ -1.94
VMP1Q96GC9 MIR4325-201ENST00000583049 90 ntBASIC2.91□□□□□ -1.94
VMP1Q96GC9 UBL5P2-201ENST00000583788 219 ntBASIC2.91□□□□□ -1.94
VMP1Q96GC9 AL451007.1-201ENST00000595491 289 ntBASIC2.91□□□□□ -1.94
VMP1Q96GC9 AL670379.6-201ENST00000603753 252 ntBASIC2.91□□□□□ -1.94
VMP1Q96GC9 AP000811.1-201ENST00000603803 651 ntBASIC2.91□□□□□ -1.94
VMP1Q96GC9 AL670379.11-201ENST00000604059 253 ntBASIC2.91□□□□□ -1.94
VMP1Q96GC9 AC008162.1-201ENST00000604718 254 ntBASIC2.91□□□□□ -1.94
VMP1Q96GC9 AL670379.1-201ENST00000604752 252 ntBASIC2.91□□□□□ -1.94
VMP1Q96GC9 AL670379.5-201ENST00000605253 252 ntBASIC2.91□□□□□ -1.94
VMP1Q96GC9 AL670379.12-201ENST00000605291 253 ntBASIC2.91□□□□□ -1.94
VMP1Q96GC9 AL670379.8-201ENST00000605353 252 ntBASIC2.91□□□□□ -1.94
VMP1Q96GC9 AL670379.7-201ENST00000605823 252 ntBASIC2.91□□□□□ -1.94
VMP1Q96GC9 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC2.91□□□□□ -1.94
VMP1Q96GC9 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.91□□□□□ -1.94
VMP1Q96GC9 AL449363.1-201ENST00000617815 186 ntBASIC2.91□□□□□ -1.94
VMP1Q96GC9 FRG1KP-201ENST00000623592 341 ntBASIC2.91□□□□□ -1.94
VMP1Q96GC9 MIR6733-201ENST00000635723 61 ntBASIC2.91□□□□□ -1.94
VMP1Q96GC9 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
VMP1Q96GC9 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
VMP1Q96GC9 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
VMP1Q96GC9 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.91□□□□□ -1.94
VMP1Q96GC9 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.9□□□□□ -1.94
VMP1Q96GC9 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.9□□□□□ -1.95
VMP1Q96GC9 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.9□□□□□ -1.95
VMP1Q96GC9 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
VMP1Q96GC9 RNU1-138P-201ENST00000384093 164 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 RNU6-14P-201ENST00000384630 106 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 RPL7P25-201ENST00000404151 721 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 SNORD88.1-201ENST00000408684 91 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 AC007064.1-201ENST00000412238 351 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 AC080125.1-201ENST00000414888 684 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC2.9□□□□□ -1.95
VMP1Q96GC9 RPL22P18-201ENST00000417197 377 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.9□□□□□ -1.95
VMP1Q96GC9 RPL37P21-201ENST00000435890 276 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 RPS12P18-201ENST00000442381 270 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.9□□□□□ -1.95
VMP1Q96GC9 RNU7-26P-201ENST00000458980 63 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 SNORD97-201ENST00000459187 142 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 AL121769.1-201ENST00000469473 401 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 RPL39P36-201ENST00000490784 156 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 RPL37P25-201ENST00000507308 276 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 AC023141.11-201ENST00000508864 202 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 AC091826.1-201ENST00000514065 313 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC2.9□□□□□ -1.95
VMP1Q96GC9 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC2.9□□□□□ -1.95
VMP1Q96GC9 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.9□□□□□ -1.95
VMP1Q96GC9 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.9□□□□□ -1.95
VMP1Q96GC9 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.9□□□□□ -1.95
VMP1Q96GC9 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC2.9□□□□□ -1.95
VMP1Q96GC9 AC006199.1-201ENST00000548728 219 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 AGGF1P5-201ENST00000567900 919 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 AC135628.1-201ENST00000568867 534 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC2.9□□□□□ -1.95
VMP1Q96GC9 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.9□□□□□ -1.95
VMP1Q96GC9 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC2.9□□□□□ -1.95
VMP1Q96GC9 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.9□□□□□ -1.95
VMP1Q96GC9 BNIP3P9-201ENST00000603714 553 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 ATP1B3P1-201ENST00000605365 821 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 AC007619.2-201ENST00000605743 379 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 AC027449.1-201ENST00000608890 407 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 AP000240.1-201ENST00000609910 452 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 AC009159.1-201ENST00000618386 642 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC2.9□□□□□ -1.95
VMP1Q96GC9 AC091953.5-201ENST00000622919 233 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 AC010297.1-201ENST00000623948 149 ntBASIC2.9□□□□□ -1.95
VMP1Q96GC9 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.95
VMP1Q96GC9 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC2.9□□□□□ -1.95
VMP1Q96GC9 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC2.89□□□□□ -1.95
VMP1Q96GC9 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
VMP1Q96GC9 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC2.89□□□□□ -1.95
VMP1Q96GC9 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
VMP1Q96GC9 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.89□□□□□ -1.95
VMP1Q96GC9 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
VMP1Q96GC9 MIR422A-201ENST00000362286 90 ntBASIC2.89□□□□□ -1.95
VMP1Q96GC9 RNU4-28P-201ENST00000364739 141 ntBASIC2.89□□□□□ -1.95
VMP1Q96GC9 SNORA67.1-201ENST00000364749 141 ntBASIC2.89□□□□□ -1.95
VMP1Q96GC9 RPS20P2-201ENST00000402520 389 ntBASIC2.89□□□□□ -1.95
VMP1Q96GC9 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC2.89□□□□□ -1.95
VMP1Q96GC9 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.89□□□□□ -1.95
VMP1Q96GC9 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.89□□□□□ -1.95
VMP1Q96GC9 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC2.89□□□□□ -1.95
VMP1Q96GC9 AC013410.2-201ENST00000422627 201 ntBASIC2.89□□□□□ -1.95
VMP1Q96GC9 AL161651.1-201ENST00000440882 223 ntBASIC2.89□□□□□ -1.95
VMP1Q96GC9 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.89□□□□□ -1.95
VMP1Q96GC9 COX6CP12-201ENST00000446748 202 ntBASIC2.89□□□□□ -1.95
VMP1Q96GC9 ST13P20-201ENST00000447996 1065 ntBASIC2.89□□□□□ -1.95
VMP1Q96GC9 RNU6-953P-201ENST00000459154 107 ntBASIC2.89□□□□□ -1.95
VMP1Q96GC9 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
VMP1Q96GC9 SNORA31.6-201ENST00000516241 130 ntBASIC2.89□□□□□ -1.95
VMP1Q96GC9 RNU6-201P-201ENST00000517100 61 ntBASIC2.89□□□□□ -1.95
VMP1Q96GC9 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.89□□□□□ -1.95
VMP1Q96GC9 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC2.89□□□□□ -1.95
VMP1Q96GC9 AP003461.1-201ENST00000528866 78 ntBASIC2.89□□□□□ -1.95
VMP1Q96GC9 AC123904.2-201ENST00000548059 300 ntBASIC2.89□□□□□ -1.95
VMP1Q96GC9 AC018714.1-201ENST00000605028 208 ntBASIC2.89□□□□□ -1.95
VMP1Q96GC9 AC144521.1-201ENST00000607148 956 ntBASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms