Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 ANKRD26P2-201ENST00000445530 1710 ntBASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 TNPO1P3-201ENST00000436471 2662 ntBASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 MTND4P1-201ENST00000457501 1466 ntBASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 BDP1P-201ENST00000582658 1990 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 MIR383-201ENST00000362257 73 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 Y_RNA.112-201ENST00000363250 102 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 RNA5SP366-201ENST00000365454 123 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 Y_RNA.373-201ENST00000365600 103 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 RNU1-63P-201ENST00000383902 164 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 MIR454-201ENST00000390180 115 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 SNORD37.1-201ENST00000390968 65 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 AL138878.1-201ENST00000405131 347 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 SNORA11F-201ENST00000408237 128 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 BX323014.1-201ENST00000412876 237 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 AL590383.1-201ENST00000428602 75 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 AL132765.1-201ENST00000434165 553 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 AC091167.1-201ENST00000492017 396 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 AC092436.1-201ENST00000506450 503 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 AC091885.1-201ENST00000506658 268 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 SMURF2P1-201ENST00000514992 481 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 MTCO2P24-201ENST00000515611 426 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 Y_RNA.682-201ENST00000516457 100 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 RNU6-1256P-201ENST00000516539 103 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 IGLV3-26-201ENST00000520756 302 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 AP003122.3-201ENST00000526316 255 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 AL118558.2-201ENST00000556294 238 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 TVP23BP1-201ENST00000557500 617 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 ZNF192P1-203ENST00000565888 810 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 AC079587.1-201ENST00000603846 277 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 CYP2C61P-201ENST00000604072 290 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 AC130324.3-201ENST00000614165 542 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 AC090132.2-201ENST00000615881 347 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 AL445567.2-201ENST00000618935 498 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 AC007998.5-201ENST00000622938 237 ntBASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.17□□□□□ -1.74
CLIP3Q96DZ5 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 SMIM11P1-201ENST00000369586 178 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 Y_RNA.414-201ENST00000384011 101 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 MIR493-201ENST00000385254 89 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 MTCYBP4-201ENST00000401524 249 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 MIR548F5-201ENST00000408421 86 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 RN7SKP158-201ENST00000410453 326 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 AC114482.1-201ENST00000418010 247 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 YPEL5P1-201ENST00000419731 367 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 AC093106.2-201ENST00000428212 385 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 RPL21P91-201ENST00000429231 479 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 MTATP6P16-201ENST00000434543 526 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 AL731563.1-201ENST00000442202 214 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 NEFMP1-201ENST00000443423 1006 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 PRPS1P1-201ENST00000445305 876 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 MRPS31P2-201ENST00000451581 518 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 RPS26P28-201ENST00000470806 348 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 RPL7P47-201ENST00000497299 556 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 AC116562.3-201ENST00000506136 177 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 RNU1-61P-201ENST00000516107 151 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 RNU6-352P-201ENST00000516908 107 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 AC068587.5-201ENST00000528506 175 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 CYCSP29-201ENST00000533731 318 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 AC002545.1-201ENST00000592511 181 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 AC012531.5-201ENST00000611375 151 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 AL110115.1-201ENST00000614396 364 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 MIR3653-201ENST00000625572 110 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms