Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
SMC1BQ8NDV3 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC4.47□□□□□ -1.69
SMC1BQ8NDV3 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.47□□□□□ -1.69
SMC1BQ8NDV3 ASNSP3-201ENST00000451989 1306 ntBASIC4.46□□□□□ -1.69
SMC1BQ8NDV3 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.46□□□□□ -1.69
SMC1BQ8NDV3 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.46□□□□□ -1.69
SMC1BQ8NDV3 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 AC073544.1-201ENST00000600110 1595 ntBASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 API5P2-201ENST00000397055 1498 ntBASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 RNU6-552P-201ENST00000362869 119 ntBASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 RN7SKP44-201ENST00000363602 316 ntBASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 RNU6-61P-201ENST00000365528 109 ntBASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 RNU6-701P-201ENST00000384059 107 ntBASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 AL606923.1-201ENST00000406616 190 ntBASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 AC114491.1-201ENST00000416095 246 ntBASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 MTCO1P39-201ENST00000426148 480 ntBASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 AC008850.1-201ENST00000427546 362 ntBASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 MTATP6P4-201ENST00000427725 675 ntBASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 AC093106.2-201ENST00000428212 385 ntBASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 AC083863.1-201ENST00000438811 231 ntBASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 RPL27AP5-201ENST00000469428 449 ntBASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 S100A11P1-201ENST00000477525 312 ntBASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 HMGN1P12-201ENST00000499125 195 ntBASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 BNIP3P6-201ENST00000549284 499 ntBASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 AC024619.4-201ENST00000580924 316 ntBASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 FGF7P1-201ENST00000582820 288 ntBASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 AC007998.5-201ENST00000622938 237 ntBASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 AC100810.6-201ENST00000638068 285 ntBASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 AC009812.4-201ENST00000569134 1805 ntBASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
SMC1BQ8NDV3 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 RNU6-1287P-201ENST00000362914 107 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 SNORD115-7-201ENST00000365306 82 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 RNU6-946P-201ENST00000383878 107 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 RNU6-767P-201ENST00000384132 107 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 RNU6-1060P-201ENST00000384664 107 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 RNU6-903P-201ENST00000391270 109 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 EEF1A1P40-201ENST00000412883 573 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 OOSP1P1-201ENST00000423265 274 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 CALM2P2-201ENST00000428512 440 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 MTND3P23-201ENST00000431980 347 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 RPL32P28-201ENST00000443577 397 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 MTND1P11-201ENST00000456661 876 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 SNRPFP3-201ENST00000457792 225 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 HMGB3P30-201ENST00000457863 606 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 AC092436.1-201ENST00000506450 503 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 AC004062.1-201ENST00000509926 645 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 SNORA31.22-201ENST00000517204 135 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 RANP9-201ENST00000519957 271 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 AP005435.4-201ENST00000529514 284 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 RANP3-201ENST00000530970 276 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 OR5B19P-201ENST00000531766 928 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 AL138976.2-201ENST00000563989 694 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 AC004696.1-201ENST00000614345 607 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 AC010338.1-201ENST00000621823 717 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 AC011155.2-201ENST00000623202 216 ntBASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
SMC1BQ8NDV3 AC007823.1-201ENST00000569932 1566 ntBASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 AL139276.1-201ENST00000311910 1001 ntBASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 SMIM11P1-201ENST00000369586 178 ntBASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 SOD2P1-201ENST00000396543 562 ntBASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 116 ms