Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
USP43Q70EL4 MIR208A-201ENST00000362287 71 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 Y_RNA.31-201ENST00000362574 102 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 RNA5SP42-201ENST00000364278 115 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
USP43Q70EL4 SNORA22B-201ENST00000383876 138 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 SNORA51.6-201ENST00000384151 125 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 Y_RNA.452-201ENST00000384202 108 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 RNU6-441P-201ENST00000384545 106 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 MIR591-201ENST00000385290 95 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 AC068050.1-201ENST00000394891 380 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 EIF5P1-201ENST00000400019 1231 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 AL162578.1-201ENST00000406202 378 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 RNU2-8P-201ENST00000410727 190 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 RNA5SP107-201ENST00000411358 122 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 AC078974.1-201ENST00000411597 223 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 AL133384.1-201ENST00000412744 351 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 AC236972.2-201ENST00000434979 310 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 HMGB3P12-201ENST00000438745 556 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 SNORA71B-202ENST00000439232 272 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 SUMO1P3-201ENST00000439961 304 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC3.3□□□□□ -1.88
USP43Q70EL4 HSPE1P28-201ENST00000443139 211 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC3.3□□□□□ -1.88
USP43Q70EL4 MTND1P9-201ENST00000453775 944 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 RPS20P21-201ENST00000466859 343 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 RPL7P5-201ENST00000471472 736 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.3□□□□□ -1.88
USP43Q70EL4 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.3□□□□□ -1.88
USP43Q70EL4 Vault.3-201ENST00000516676 95 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 RNA5SP179-201ENST00000517284 121 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.3□□□□□ -1.88
USP43Q70EL4 AP003072.2-201ENST00000527756 676 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.3□□□□□ -1.88
USP43Q70EL4 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC3.3□□□□□ -1.88
USP43Q70EL4 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.3□□□□□ -1.88
USP43Q70EL4 AC004024.1-201ENST00000549244 247 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.3□□□□□ -1.88
USP43Q70EL4 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.3□□□□□ -1.88
USP43Q70EL4 OR4T1P-201ENST00000554933 911 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.3□□□□□ -1.88
USP43Q70EL4 AC004817.2-201ENST00000561794 651 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC3.3□□□□□ -1.88
USP43Q70EL4 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.3□□□□□ -1.88
USP43Q70EL4 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.3□□□□□ -1.88
USP43Q70EL4 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.3□□□□□ -1.88
USP43Q70EL4 AC091167.4-201ENST00000605079 184 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 MIR98-201ENST00000606724 119 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.3□□□□□ -1.88
USP43Q70EL4 AL161734.1-201ENST00000609720 557 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 AC084757.4-201ENST00000616350 526 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 AC087588.2-201ENST00000617667 426 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 AC100810.6-201ENST00000638068 285 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 AC119674.1-207ENST00000641355 633 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.3□□□□□ -1.88
USP43Q70EL4 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
USP43Q70EL4 AC007256.1-201ENST00000392253 2765 ntBASIC3.3□□□□□ -1.88
USP43Q70EL4 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.3□□□□□ -1.88
USP43Q70EL4 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
USP43Q70EL4 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
USP43Q70EL4 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.3□□□□□ -1.88
USP43Q70EL4 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
USP43Q70EL4 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.29□□□□□ -1.88
USP43Q70EL4 MTND5P33-201ENST00000571250 1450 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 RNU5E-1-201ENST00000362477 120 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 Y_RNA.259-201ENST00000364619 101 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 RNU6-744P-201ENST00000365557 107 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 RNU6-1316P-201ENST00000384242 108 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 SNORD116-29-201ENST00000384516 83 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 MIR649-201ENST00000384843 97 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 FGFR1OP2P1-201ENST00000395943 500 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 DSTNP4-201ENST00000399472 474 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 BTBD10P2-201ENST00000404779 676 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 MIR1302-3-201ENST00000408128 138 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 RNU2-21P-201ENST00000410368 188 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 MTND3P8-201ENST00000412909 339 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC3.29□□□□□ -1.88
USP43Q70EL4 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
USP43Q70EL4 PMCHL1-202ENST00000423102 261 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 TRIAP1P1-201ENST00000427062 225 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.29□□□□□ -1.88
USP43Q70EL4 AP000907.1-201ENST00000428428 510 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 CBX3P6-201ENST00000430257 527 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 RPL36P19-201ENST00000430744 301 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 SNRPEP4-201ENST00000435815 279 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 RPL23AP22-201ENST00000437556 453 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 HMGB1P18-201ENST00000438801 619 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 SEPT14P3-201ENST00000439401 183 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.29□□□□□ -1.88
USP43Q70EL4 AL732372.2-207ENST00000445840 183 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 RPL7P12-201ENST00000446719 750 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 RPL29P29-201ENST00000448725 423 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 SEPT14P2-201ENST00000453405 183 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 RPL7P49-201ENST00000471402 708 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 AC010655.3-201ENST00000478818 450 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 AC027575.1-201ENST00000481064 460 ntBASIC3.29□□□□□ -1.88
USP43Q70EL4 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC3.29□□□□□ -1.88
USP43Q70EL4 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.29□□□□□ -1.88
USP43Q70EL4 SEPT14P4-201ENST00000513445 186 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 134.2 ms