Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC084024.2-201ENST00000503480 791 ntBASIC1.21□□□□□ -2.22
FOXA3P55318 MRPS33P3-201ENST00000513456 322 ntBASIC1.21□□□□□ -2.22
FOXA3P55318 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.21□□□□□ -2.22
FOXA3P55318 AC027309.2-201ENST00000520566 192 ntBASIC1.21□□□□□ -2.22
FOXA3P55318 GNAI2P1-201ENST00000541815 315 ntBASIC1.21□□□□□ -2.22
FOXA3P55318 AC110588.1-201ENST00000559699 137 ntBASIC1.21□□□□□ -2.22
FOXA3P55318 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC1.21□□□□□ -2.22
FOXA3P55318 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC1.21□□□□□ -2.22
FOXA3P55318 DUXAP11-201ENST00000603858 526 ntBASIC1.21□□□□□ -2.22
FOXA3P55318 SEPT7P9-203ENST00000604116 343 ntBASIC1.21□□□□□ -2.22
FOXA3P55318 AC004067.1-201ENST00000608733 700 ntBASIC1.21□□□□□ -2.22
FOXA3P55318 AL121652.1-201ENST00000608851 448 ntBASIC1.21□□□□□ -2.22
FOXA3P55318 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC1.21□□□□□ -2.22
FOXA3P55318 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.21□□□□□ -2.22
FOXA3P55318 MTND5P10-201ENST00000603719 1809 ntBASIC1.21□□□□□ -2.22
FOXA3P55318 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC1.21□□□□□ -2.22
FOXA3P55318 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC1.21□□□□□ -2.22
FOXA3P55318 AP000648.3-201ENST00000623539 4507 ntBASIC1.2□□□□□ -2.22
FOXA3P55318 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC1.2□□□□□ -2.22
FOXA3P55318 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
FOXA3P55318 MIR126-201ENST00000362291 85 ntBASIC1.2□□□□□ -2.22
FOXA3P55318 AL109755.1-201ENST00000401791 649 ntBASIC1.2□□□□□ -2.22
FOXA3P55318 AL033519.2-201ENST00000403958 392 ntBASIC1.2□□□□□ -2.22
FOXA3P55318 RN7SKP223-201ENST00000410582 62 ntBASIC1.2□□□□□ -2.22
FOXA3P55318 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC1.2□□□□□ -2.22
FOXA3P55318 ZYG11AP1-201ENST00000430329 837 ntBASIC1.2□□□□□ -2.22
FOXA3P55318 ZNF965P-201ENST00000432501 817 ntBASIC1.2□□□□□ -2.22
FOXA3P55318 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC1.2□□□□□ -2.22
FOXA3P55318 MTND6P13-201ENST00000443510 523 ntBASIC1.2□□□□□ -2.22
FOXA3P55318 AL050341.1-201ENST00000447743 313 ntBASIC1.2□□□□□ -2.22
FOXA3P55318 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC1.2□□□□□ -2.22
FOXA3P55318 AC023790.1-201ENST00000482174 347 ntBASIC1.2□□□□□ -2.22
FOXA3P55318 HMGB1P35-201ENST00000503360 598 ntBASIC1.2□□□□□ -2.22
FOXA3P55318 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC1.2□□□□□ -2.22
FOXA3P55318 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
FOXA3P55318 RNA5SP112-201ENST00000515937 99 ntBASIC1.2□□□□□ -2.22
FOXA3P55318 AC107953.1-201ENST00000522216 297 ntBASIC1.2□□□□□ -2.22
FOXA3P55318 EEF1A1P37-201ENST00000522748 715 ntBASIC1.2□□□□□ -2.22
FOXA3P55318 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC1.2□□□□□ -2.22
FOXA3P55318 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC1.2□□□□□ -2.22
FOXA3P55318 MIR3198-2-201ENST00000577868 80 ntBASIC1.2□□□□□ -2.22
FOXA3P55318 MIR4255-201ENST00000579351 72 ntBASIC1.2□□□□□ -2.22
FOXA3P55318 AC024619.4-201ENST00000580924 316 ntBASIC1.2□□□□□ -2.22
FOXA3P55318 MIR4672-201ENST00000583126 81 ntBASIC1.2□□□□□ -2.22
FOXA3P55318 BNIP3P25-201ENST00000596023 559 ntBASIC1.2□□□□□ -2.22
FOXA3P55318 AL031274.2-201ENST00000599419 203 ntBASIC1.2□□□□□ -2.22
FOXA3P55318 AL136981.2-201ENST00000617319 734 ntBASIC1.2□□□□□ -2.22
FOXA3P55318 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.2□□□□□ -2.22
FOXA3P55318 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.2□□□□□ -2.22
FOXA3P55318 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.19□□□□□ -2.22
FOXA3P55318 UBE2L2-201ENST00000254302 429 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 SNORD115-48-201ENST00000364764 76 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 RNA5SP88-201ENST00000365560 109 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.19□□□□□ -2.22
FOXA3P55318 SNORA40.19-201ENST00000390846 128 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 MCTS2P-201ENST00000394552 546 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 AC068050.1-201ENST00000394891 380 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 AL589655.1-201ENST00000405398 482 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 AL356131.1-201ENST00000405826 414 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 TRIM60P5Y-201ENST00000413946 574 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC1.19□□□□□ -2.22
FOXA3P55318 AL445669.1-201ENST00000426743 755 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC1.19□□□□□ -2.22
FOXA3P55318 AL139415.2-201ENST00000431968 163 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 FAM103A2P-201ENST00000444122 354 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC1.19□□□□□ -2.22
FOXA3P55318 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.19□□□□□ -2.22
FOXA3P55318 RPS20P22-201ENST00000473700 357 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 TRBV1-201ENST00000476502 284 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.19□□□□□ -2.22
FOXA3P55318 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC1.19□□□□□ -2.22
FOXA3P55318 AC017037.2-201ENST00000513850 890 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 RNU1-103P-201ENST00000516502 125 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 DUXAP1-201ENST00000556632 463 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 AC025918.2-201ENST00000558683 763 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 AL354943.1-201ENST00000572103 781 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 MIR4713-201ENST00000582691 75 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 MIR8081-201ENST00000611533 95 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 uc_338.14-201ENST00000613162 166 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 AL359854.1-201ENST00000614203 1594 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC1.19□□□□□ -2.22
FOXA3P55318 HPVC1-201ENST00000629899 1198 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 MIR4275-201ENST00000636486 87 ntBASIC1.19□□□□□ -2.22
FOXA3P55318 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC1.19□□□□□ -2.22
FOXA3P55318 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
FOXA3P55318 DBF4P1-201ENST00000412976 1892 ntBASIC1.18□□□□□ -2.22
FOXA3P55318 AC104454.1-201ENST00000421341 1401 ntBASIC1.18□□□□□ -2.22
FOXA3P55318 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC1.18□□□□□ -2.22
FOXA3P55318 MIR320A-201ENST00000385302 82 ntBASIC1.18□□□□□ -2.22
FOXA3P55318 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.18□□□□□ -2.22
FOXA3P55318 UBE2V1P2-201ENST00000397758 440 ntBASIC1.18□□□□□ -2.22
FOXA3P55318 RN7SKP51-201ENST00000410781 304 ntBASIC1.18□□□□□ -2.22
FOXA3P55318 RN7SKP101-201ENST00000411376 320 ntBASIC1.18□□□□□ -2.22
FOXA3P55318 NDUFS5P4-201ENST00000412983 318 ntBASIC1.18□□□□□ -2.22
FOXA3P55318 PPP1R11P2-201ENST00000423543 382 ntBASIC1.18□□□□□ -2.22
FOXA3P55318 FAM204CP-201ENST00000424489 642 ntBASIC1.18□□□□□ -2.22
FOXA3P55318 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC1.18□□□□□ -2.22
FOXA3P55318 FABP5P14-201ENST00000437273 393 ntBASIC1.18□□□□□ -2.22
FOXA3P55318 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC1.18□□□□□ -2.22
FOXA3P55318 FO393415.2-201ENST00000480085 343 ntBASIC1.18□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 122.9 ms