Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MTCO3P24-201ENST00000572729 782 ntBASIC2.24□□□□□ -2.05
BRCA1P38398 MIR4448-201ENST00000584360 86 ntBASIC2.24□□□□□ -2.05
BRCA1P38398 AC060766.3-201ENST00000591442 263 ntBASIC2.24□□□□□ -2.05
BRCA1P38398 AL161729.4-201ENST00000604650 476 ntBASIC2.24□□□□□ -2.05
BRCA1P38398 FTX_3.1-201ENST00000610451 147 ntBASIC2.24□□□□□ -2.05
BRCA1P38398 AC090617.7-201ENST00000623952 126 ntBASIC2.24□□□□□ -2.05
BRCA1P38398 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.24□□□□□ -2.05
BRCA1P38398 AC138915.1-201ENST00000565427 1685 ntBASIC2.24□□□□□ -2.05
BRCA1P38398 AC009812.4-201ENST00000569134 1805 ntBASIC2.24□□□□□ -2.05
BRCA1P38398 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.24□□□□□ -2.05
BRCA1P38398 SNORD56.5-201ENST00000364281 72 ntBASIC2.24□□□□□ -2.05
BRCA1P38398 MIR325-201ENST00000385260 98 ntBASIC2.24□□□□□ -2.05
BRCA1P38398 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
BRCA1P38398 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.24□□□□□ -2.05
BRCA1P38398 MRPS36P1-201ENST00000421291 307 ntBASIC2.24□□□□□ -2.05
BRCA1P38398 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.24□□□□□ -2.05
BRCA1P38398 RNF2P1-201ENST00000442955 1010 ntBASIC2.24□□□□□ -2.05
BRCA1P38398 OSTCP8-201ENST00000445117 448 ntBASIC2.24□□□□□ -2.05
BRCA1P38398 AL137159.1-201ENST00000452808 512 ntBASIC2.24□□□□□ -2.05
BRCA1P38398 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC2.24□□□□□ -2.05
BRCA1P38398 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.24□□□□□ -2.05
BRCA1P38398 RNU6-528P-201ENST00000516926 100 ntBASIC2.24□□□□□ -2.05
BRCA1P38398 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.24□□□□□ -2.05
BRCA1P38398 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC2.24□□□□□ -2.05
BRCA1P38398 MIR5089-201ENST00000580047 84 ntBASIC2.24□□□□□ -2.05
BRCA1P38398 SNORA4-201ENST00000584302 138 ntBASIC2.24□□□□□ -2.05
BRCA1P38398 AL606834.3-201ENST00000602615 496 ntBASIC2.24□□□□□ -2.05
BRCA1P38398 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
BRCA1P38398 AC009268.2-201ENST00000621925 457 ntBASIC2.24□□□□□ -2.05
BRCA1P38398 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC2.24□□□□□ -2.05
BRCA1P38398 AP003476.1-201ENST00000623984 516 ntBASIC2.24□□□□□ -2.05
BRCA1P38398 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
BRCA1P38398 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
BRCA1P38398 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.23□□□□□ -2.05
BRCA1P38398 CDR1-202ENST00000625883 1485 ntBASIC2.23□□□□□ -2.05
BRCA1P38398 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
BRCA1P38398 Y_RNA.224-201ENST00000364308 111 ntBASIC2.23□□□□□ -2.05
BRCA1P38398 AL603865.2-201ENST00000401679 213 ntBASIC2.23□□□□□ -2.05
BRCA1P38398 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.23□□□□□ -2.05
BRCA1P38398 AL356320.2-201ENST00000417263 507 ntBASIC2.23□□□□□ -2.05
BRCA1P38398 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC2.23□□□□□ -2.05
BRCA1P38398 AC092573.2-201ENST00000434546 243 ntBASIC2.23□□□□□ -2.05
BRCA1P38398 TAAR7P-201ENST00000436141 242 ntBASIC2.23□□□□□ -2.05
BRCA1P38398 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC2.23□□□□□ -2.05
BRCA1P38398 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC2.23□□□□□ -2.05
BRCA1P38398 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.23□□□□□ -2.05
BRCA1P38398 AC055855.1-201ENST00000489563 579 ntBASIC2.23□□□□□ -2.05
BRCA1P38398 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC2.23□□□□□ -2.05
BRCA1P38398 RNU6-1256P-201ENST00000516539 103 ntBASIC2.23□□□□□ -2.05
BRCA1P38398 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC2.23□□□□□ -2.05
BRCA1P38398 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC2.23□□□□□ -2.05
BRCA1P38398 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.23□□□□□ -2.05
BRCA1P38398 AC084824.4-201ENST00000620106 731 ntBASIC2.23□□□□□ -2.05
BRCA1P38398 AC090772.4-201ENST00000623599 362 ntBASIC2.23□□□□□ -2.05
BRCA1P38398 MIR1322-201ENST00000638013 71 ntBASIC2.23□□□□□ -2.05
BRCA1P38398 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC2.23□□□□□ -2.05
BRCA1P38398 ZNF720P1-201ENST00000562403 1939 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
BRCA1P38398 SNORD116-12-201ENST00000384468 92 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 MIR135A2-201ENST00000384854 100 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 MIR627-201ENST00000384979 97 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 U3.37-201ENST00000408528 213 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 RAC1P8-201ENST00000427086 527 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 AC090774.1-201ENST00000435925 246 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.22□□□□□ -2.05
BRCA1P38398 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC2.22□□□□□ -2.05
BRCA1P38398 AC093677.1-201ENST00000514414 678 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC2.22□□□□□ -2.05
BRCA1P38398 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC2.22□□□□□ -2.05
BRCA1P38398 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC2.22□□□□□ -2.05
BRCA1P38398 AC103810.1-201ENST00000579873 453 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 DUXAP4-201ENST00000603046 613 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 AC099785.1-201ENST00000605697 437 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 uc_338.5-201ENST00000611839 155 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 AC011890.2-201ENST00000613393 294 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 AL596245.1-201ENST00000618994 362 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.22□□□□□ -2.05
BRCA1P38398 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.22□□□□□ -2.05
BRCA1P38398 SDAD1P2-201ENST00000441308 2028 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 AL049641.1-201ENST00000441055 1948 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
BRCA1P38398 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC2.22□□□□□ -2.05
BRCA1P38398 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.22□□□□□ -2.05
BRCA1P38398 UBE2L2-201ENST00000254302 429 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 RNU6-28P-201ENST00000362378 107 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 VTRNA1-1-201ENST00000363120 99 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 SET-203ENST00000372688 801 ntTSL 2 BASIC2.22□□□□□ -2.05
BRCA1P38398 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC2.22□□□□□ -2.05
BRCA1P38398 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.22□□□□□ -2.05
BRCA1P38398 DNAJC19P4-201ENST00000440115 345 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 AC073901.1-201ENST00000462471 408 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 AL049714.1-201ENST00000466686 347 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC2.22□□□□□ -2.05
BRCA1P38398 AC109464.2-201ENST00000510242 943 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.22□□□□□ -2.05
BRCA1P38398 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC2.22□□□□□ -2.05
BRCA1P38398 TTC39CP1-201ENST00000512513 755 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 SNORA48.10-201ENST00000516965 160 ntBASIC2.22□□□□□ -2.05
BRCA1P38398 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms